Asparagus officinalis (garden asparagus): 109828776
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Entry
109828776 CDS
T05243
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 52C-like
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
aof
Asparagus officinalis (garden asparagus)
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aof03019
]
109828776
03041 Spliceosome [BR:
aof03041
]
109828776
03036 Chromosome and associated proteins [BR:
aof03036
]
109828776
Enzymes [BR:
aof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
109828776
Messenger RNA biogenesis [BR:
aof03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
109828776
mRNA cycle factors
Common to processing body (P body) and stress granule
109828776
Spliceosome [BR:
aof03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
109828776
Chromosome and associated proteins [BR:
aof03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
109828776
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
PAM2
Motif
Other DBs
NCBI-GeneID:
109828776
NCBI-ProteinID:
XP_020251293
LinkDB
All DBs
Position
1:99092176..99099178
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AA seq
571 aa
AA seq
DB search
MPSHLRSSKPLNASAPEFNPSVPALPSNRNPNPGFSRPVRFRSERDRGARFRDPNPNHFD
VADKFNELGIAEGGISGDGGINFDAYDDIPVETSGQDVPPPASSFAEIDLGEALNRNIAM
CKYVKPTPVQRHAIPISMAGRDLMACAQTGSGKTAAFCFPIISGIMKEGVSQQRGYRGPH
TAFPLALILSPTRELSSQIHEEAKKFSYQTGVKVVVAYGGAPITVQLRELERGVDILVAT
PGRLVDLIERARVSLRNIKYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGIRQTMLFSA
TFPNEIQRLASDFLSNYIFLAVGRVGSSTDLITQRVEYVPDMDKRSHLMDLLHVQKVNGS
TDKQSLTLVFVETKRGADSLEYWLSSNGFPATAIHGDRTQPEREKALNSFKRGWTPIMVA
TDVAARGLDIPHVAHVINFDLPKDIDDYVHRIGRTGRAGKSGLATAFFNDGNQSLAKSLA
ELMQEANQEVPDWLVKYAERSSYSSGRNRRSGGGSRFGGHDYRKDSYSRRGSYSSHSYGG
SDGGHSSGVVGGSYYTTGYDYNGPIIASGWD
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
atgccgtcgcatctccgatcatcgaagcctctgaacgcctccgctcctgagtttaaccca
tcggttccagctctcccctcgaaccgaaaccctaaccctggcttttctcggccggtccgt
ttccgatcggagcgggaccggggggctcggttccgtgacccaaaccctaaccattttgat
gttgctgataagtttaacgagttggggatcgctgagggggggatcagcggcgacgggggg
atcaattttgatgcttatgatgacattccggtggagacaagtgggcaggatgtgccgcca
ccggcgagtagctttgctgagatcgatcttggcgaggcgctgaatcgaaacattgcaatg
tgcaagtatgtgaaaccgacgccggtgcagaggcatgcgattccaatatccatggccggg
agggatctgatggcctgtgcacagacgggctcagggaagacggcggcgttttgttttccg
attatctctgggataatgaaggaaggggtgtcgcagcaacgggggtatcgagggcctcac
acggcgtttccgttggcgcttatattgtcgccaacaagggagttgtcttcacagattcat
gaggaggcaaagaagttctcgtatcagactggggttaaggtggttgtggcttatggaggt
gctcctatcactgtgcagttacgtgagttagagagaggcgttgatattctagttgctaca
cctggacgcttagttgatctgattgaaagagcaagggtctcacttcgcaatatcaaatac
ttggctttagatgaagctgataggatgctggatatgggtttcgagcctcagatccgcaag
attgttgagcaaatggacatgccacctcccggcataaggcagacaatgctttttagcgcg
acatttccaaatgagattcagcggttagcttcagactttttgtcgaattatatatttctg
gctgttggaagggttgggtctagcacagatttaatcacccaaagagttgaatatgttcca
gatatggataagagaagccacctgatggatcttctccatgtccaaaaagttaatggatct
acagacaagcaatctttaaccttggtttttgtggaaacaaaacgaggtgcggattcttta
gaatattggttatcttctaatggcttccctgcaacagctatacatggagatcgtactcag
cctgagcgtgagaaagctttaaattccttcaagcgaggttggactccaatcatggtagct
acagatgtggctgctcgtggtctcgacatccctcacgtggctcacgtgatcaactttgat
ctccctaaagacatagatgactacgtgcatcgaattggcagaacaggccgagctggcaaa
tccggcttagctacagcattcttcaacgatggaaaccaatcactggccaagtctctagct
gagctcatgcaggaagcaaaccaagaagtcccagattggcttgtaaaatatgctgaaaga
tcatcttattcaagtgggagaaatcgtaggtctggtggcggtagcagattcggtggccat
gattatcgaaaggactcttattcgaggagagggagttatagttctcactcttacggaggt
agtgatggtggtcacagctcgggggttgttggagggtcttattatactacgggttatgat
tataatggaccgatcattgcatcagggtgggattga
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