Asparagus officinalis (garden asparagus): 109828833
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Entry
109828833 CDS
T05243
Name
(RefSeq) protein transport protein SEC13 homolog B-like
KO
K14004
protein transport protein SEC13
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03013
Nucleocytoplasmic transport
aof04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
109828833
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
109828833
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aof03019
]
109828833
04131 Membrane trafficking [BR:
aof04131
]
109828833
Messenger RNA biogenesis [BR:
aof03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
109828833
Membrane trafficking [BR:
aof04131
]
Protein recycling
Rab GTPases and associated proteins
Rab11 associated proteins
109828833
Endoplasmic reticulum (ER) - Golgi transport
Forward pathways
Coat protein complex II (COP-II)
109828833
Autophagy
Other autophagy associated proteins
SEACAT/GATOR2 complex
109828833
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_THOC3
WD40
Beta-prop_IFT122_1st
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40_WDHD1_1st
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_WDR35_TULP_N
Beta-prop_WDR3_2nd
Beta-prop_RIG_2nd
Beta-prop_Vps41
WDR55
WD40_Gbeta
ANAPC4_WD40
Beta-prop_WDR19_1st
WD40_MABP1-WDR62_2nd
Beta-prop_EIPR1
EIF3I
Beta-prop_WDR90_POC16_2nd
Beta-prop_HPS5
DSE1_N
NBCH_WD40
Beta-prop_WDR36-Utp21_2nd
Beta-prop_NOL10_N
WD40_2
Motif
Other DBs
NCBI-GeneID:
109828833
NCBI-ProteinID:
XP_020251386
LinkDB
All DBs
Position
1:complement(103759043..103764430)
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AA seq
398 aa
AA seq
DB search
MPSQKIETGHQDVVHDVCMDYYGKRLATASSDATIKIIGVSGSSSQHLAVLSGHQGPVWQ
VAWTHPKFGTMLASCSYDGRVIIWKEGNKPEEWIQAHIFTEHKSSVNSIAWAPHELGLSL
ACGSSDGNISVFTARPDGGWDTTKIDQAHQVGVTSVSWAPSTAPGALVGSGLLDPVYKLV
SGGCDNTVKVWKLFNGSWKMDCFPALQMHSDWVRDVAWAPNLGLPKSTIASSSQDGTVVI
WTVAKEGDQWEGRILNDFKTPVWRVSWSLTGNILAVADGNNNVTLPLSHRDSISGWVSFF
ALHELLAVPCAPFVLYAQSILLLVSLFSISLFVSLILGTKRADIYVSFLLYLKWSFHFPK
LLFTSFVSCCLVSIRSLVMFRKRTDNFKDFTSLYFGNC
NT seq
1197 nt
NT seq
+upstream
nt +downstream
nt
atgccttctcagaagatagagactggccaccaagatgttgttcacgatgtttgcatggat
tactatggcaagagacttgcaactgcctcatctgatgctactattaagataattggtgtt
agtggctcctcgagtcagcatctcgccgtcctgagtgggcaccaaggtcctgtctggcag
gttgcctggacccacccaaagttcggaaccatgcttgcttcttgcagttatgatggccgt
gtgatcatatggaaggaaggaaataaaccagaagagtggattcaggcccacatttttacc
gagcacaaatcttctgttaattctattgcatgggctccacatgagcttggcctctcctta
gcatgtggatcctctgatggaaacatttcagtcttcacagctcgacctgatggtggctgg
gatacaacaaagatcgatcaggcacaccaagtcggagtgacttctgtctcgtgggcccca
tctacagctcctggtgccttagttggttcaggcctgcttgatcctgtctataagcttgtt
tctggtggctgtgataacacagttaaagtgtggaagttatttaatggaagttggaagatg
gattgttttcctgcactccagatgcacagtgattgggtaagggatgttgcttgggcacca
aaccttggtcttcctaaatcaacgattgccagttcgtcgcaggatggaacggtggttata
tggactgtggcaaaagaaggtgatcagtgggaaggtaggattttgaatgatttcaagact
cctgtttggagggtatcatggtctttgacagggaatatattggctgttgctgatgggaac
aacaacgtgaccttaccgttgagccatagagattctatttctggttgggtatctttcttt
gctttgcatgaacttcttgctgtaccatgcgctccttttgttctgtacgctcagagcatc
ttgctccttgtttctctattttctatttctctgtttgtgtctctaattttaggaacaaaa
agagcagacatctatgtttctttcctcctctacctcaaatggagttttcactttcctaaa
cttctgtttacgagctttgtgtcatgttgcttagtgtctattagatctctagtaatgttt
aggaagaggaccgataattttaaggatttcacttccctttacttcgggaattgctga
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