Asparagus officinalis (garden asparagus): 109828868
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Entry
109828868 CDS
T05243
Name
(RefSeq) general negative regulator of transcription subunit 3-like isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109828868
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aof03019
]
109828868
Messenger RNA biogenesis [BR:
aof03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109828868
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
109828868
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
109828868
NCBI-ProteinID:
XP_020251428
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Position
1:complement(106413742..106433813)
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AA seq
864 aa
AA seq
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MGASRKLQTEIDRVLKKVHEGVQEFDTIWDKVYETDNANLKEKFEGDLKKEIKKLQRYRD
QIKTWQQSSEIKDKKALMDARKLIEREMERFKVCEKETKTKAFSKEGLGQQPKTDPKEKA
KSETRDWLNNVVGDLESQIDNFEAELEGISGKKGKTRNPQLTRLEASIGRHKAHVLKLEL
ILRLLDNDELSPDQVNDLKYYLDDYIECNQVDFERFSNIDELYVSLPLDKVEALEDMVTV
TLGSSGLVKAALLSAPQQSADQDQSDETASLDSNADTISKTPPAKTVAAGPLVSSSASPS
LVSGTLEVPISAATSSSAVHTLLDGPGPAAALAGTAAVRGVTGESAAFLSSSLGNSSDSV
KEADNNVISDSGSSATTPETGLEKVVSRGTSYQESIGASMSLNSVSGVASSGSLGSFPVV
SDLSKRNISSINERREVDSIPPTLAAQLSNRMQSQQISKFNADTLSNDNVGEGTGIGGRS
FSHSIATSQWTPQSAASFQNPAEIRGRPEIAPDQREKYLQRLQQVQQQGHGALLSVPHLP
GANHKQFPMQHENSILQQFNSQGTSLPPQLGLGLNLQSSGASSVASTPLQSPIHHLTSQI
PLISTGPKDVDIGHSKGEQQQQNLSDDMKIESAQVSGLSNKSDDNLKTPLSVMGTTGEGS
QLPRESDLSPGQPLLPSQSSSGVGVIGRRSVSDLGAIGENLGGSSGNSGGMSDQFHTLQL
LEAALHRLPQPKDSERVKRYVPKHPAVTPSSFPQTQADIIRNPALWKRLGADPLGIDTLF
FAFYYQQNTYQQYLAARELKTQAWRFHRQYNTWFQRHEEPDFATDDYEKGSYVYFDFHVD
TAWLQRIKNDFTFEYKHLEDDLVI
NT seq
2595 nt
NT seq
+upstream
nt +downstream
nt
atgggagcgagtcggaagcttcagaccgagatcgatcgggtcttgaagaaggtccacgag
ggcgtgcaggagttcgacactatttgggacaaggtttatgaaacggacaatgcgaacctt
aaggagaagtttgaaggggatctcaagaaggagatcaagaagctgcagaggtatcgggat
cagatcaagacgtggcagcagtcgagcgagataaaggacaaaaaggctctcatggatgcc
cgaaagcttattgagcgtgaaatggaaagatttaaagtctgtgagaaggagacaaaaacg
aaagccttttccaaagaaggacttggccaacaacccaagactgacccaaaagagaaagct
aaatctgaaacaagggactggttgaacaatgtggttggagatttggaaagtcaaatcgat
aattttgaagcagagcttgaagggatatctggaaagaaggggaaaacaaggaatcctcag
ctgacacgtttagaggcatctattggccgccacaaagctcacgtactgaagctggagttg
atcttaagactattggataatgacgagttgagtcctgatcaggtcaatgaccttaaatat
tatttggatgattacatcgaatgcaatcaggtggattttgaacgatttagcaacattgat
gagctgtacgtctctttaccgctagacaaggtggaagctcttgaagatatggtgacagtg
acgcttggcagctctggtcttgtgaaggctgctctcttgtcggcccctcagcagagcgct
gatcaagatcaaagtgatgaaacagcttctctggacagcaatgctgataccatttctaaa
actccacctgctaagactgtggctgcaggacctttggtgtcatcatctgcttcacccagt
cttgtttctggtacactagaagtacctatttcagctgccacatccagttcggctgtccat
acattgcttgatgggcccggacctgcagctgcacttgctggtacagctgccgttcgaggt
gtcacaggggagtcagctgctttcctgtcttcatcacttgggaattcttctgattcagtc
aaggaggcagataataatgtcatctctgactctggatcttctgcaaccacccctgagact
ggactagagaaagttgttagcagaggaacatcctatcaagaatccatcggtgcttccatg
agtttaaattccgtcagtggtgttgctagcagtggatctcttggttcatttcctgtagta
tctgatttgtctaagagaaatatttccagcattaatgaaaggagagaggttgatagtatt
cctccgactctggctgcccagctaagtaacagaatgcagtcacagcagatttcaaaattt
aatgctgatacactttcaaacgacaatgtcggtgagggcactggtattggtggaagatcc
ttttcacattcaatagctacctcacagtggacgcctcagagtgcggcttcatttcagaac
cctgctgaaattcgtggaagacctgagattgctcctgaccagagggaaaagtatctgcaa
cgactgcaacaagtacagcaacaaggtcatggtgctcttctcagtgtccctcatctgcca
ggggcaaatcacaaacagttccctatgcaacatgaaaattcaatcttgcaacagttcaat
tctcaaggcacatctttgccacctcaattggggctggggcttaatcttcagtcctcgggt
gctagttctgttgcatccacaccgctacaaagccccatccatcacttaacctctcaaatt
ccacttatctcaactggaccaaaagatgtagatataggccattccaagggagagcagcag
cagcagaacttaagtgatgatatgaagatagaatctgctcaagtttcaggtcttagcaat
aaaagcgatgataatttgaagacaccactctcggtaatgggaacaaccggtgaaggcagc
caattacctagagaaagtgatctctcgcctgggcagccattgctaccaagtcagtcttct
tctggtgttggtgtgattggtcgaagaagtgtttcagaccttggcgccattggtgagaac
cttggtggttcgtctggtaattctggtggtatgagtgatcagttccatactttgcaatta
ttggaagctgcacttcatcgacttcctcagccaaaagattctgaacgtgtaaaaagatat
gttcctaaacaccctgccgtaactccttcgagcttccctcaaactcaggcagatattatt
agaaatcctgctctctggaaaagattgggtgctgatccattaggcattgacaccttgttc
tttgcgttttactatcagcagaacacttaccaacaatatttagctgcaagagagctgaaa
actcaggcatggagatttcacagacaatataacacatggttccaacggcatgaggagcca
gattttgcaaccgatgattatgaaaaaggatcatatgtgtactttgattttcatgtggac
actgcatggttgcaaaggataaaaaacgatttcacttttgaatataaacaccttgaggat
gaccttgtgatctag
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