Asparagus officinalis (garden asparagus): 109829078
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Entry
109829078 CDS
T05243
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109829078
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aof03019
]
109829078
03012 Translation factors [BR:
aof03012
]
109829078
Enzymes [BR:
aof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109829078
Messenger RNA biogenesis [BR:
aof03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
109829078
Translation factors [BR:
aof03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
109829078
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
dsrm
DEAD
HA2_N
AAA_22
AAA_19
nSTAND3
T2SSE
Dicer_dimer
AAA_16
ATPase
PhoH
AAA_30
Motif
Other DBs
NCBI-GeneID:
109829078
NCBI-ProteinID:
XP_020251742
LinkDB
All DBs
Position
1:114475805..114498224
Genome browser
AA seq
1188 aa
AA seq
DB search
MPSSALLRVSLRSRARLTMSLTSLRPLHFSSRNPRNPRNKMMKSGIYVPPIPRLRSVIAS
ANGTIHTARSVDYDWRDEGLSSYVKRQQSASYGRYAYDDYSEDDSDRDVESSSVASNKGA
STLDNVDEWKWKLSMLLRNEREQEVVSRERKDRRDYEQIAAVAERMGLYSRQYAKVIVFS
KVPLPNYRSDLDDKRPQREVSIPTGLQREVGALLGDYLARKQTNRESFPHLPFSRSSSTD
SFANDEGLFEQQDPQTPTSTVMEKILKRRSLQLRNQQQAWEESPEGQRMLEFRRSLPAYK
EKQALLEAISRNQVVVVSGETGCGKTTQLPQYILESEIDAARGATCSIICTQPRRISAMA
VSERVAAERGEKLGESVGYKVRLEGIKGRDTRLLFCTTGILLRRLLIDRNLKGVTHVIVD
EIHERGMNEDFLLIVLKELLPRRPELRLVLMSATLNAELFSSYFHGAPMIHIPGFTYPVR
SNFLENVLEITGHRLTPYNQIDDYGQEKSWKMQKQALRKRKSQIASAVEDALETADFREY
GSRTRDSLSCWNPDSIGFNLIEAVLCHICRKERPGAILVFMTGWDDINSLKDQLLANPFL
GDPSKVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVVDCGKAK
ETSYDALNNTPCLLPTWISKASARQRRGRAGRVQPGECYHLYPRCVYDAFTDYQLPELLR
TPLQSLCLQIKSLRLGSISDFLSRALQSPEPLSIQNAIEYLKVIGALDDKEELTVLGRYL
SMLPVEPKLGKMLIYGAIFNCLDPILTVVAGLSVRDPFLTPFDKRDLADSAKSQFSCRDY
SDHLALVRAYEGWKDAEREHSGYEYCWKNFLSAQTLKAIDSLRKQFIFLLKDTGLVDENF
STCNKWSRDENLIRAVICAGLYPGICSVVNKEKSIALKTMEDGQVMLYSNSVNGREARIP
YPWLVFNEKVKVNSVFLRDSTAVSDTVLLLFGGNITQGGLDGHLKMLGGYLEFFMRPDLA
STYLGLKRELDELLHNKLLNPRMDIQTSEELLAAVRLLVTEDPCSGRFVYGRQQLTPKKT
KSLLSAKSSGGGGGDNSKSQLQTLLTRAGHDNPIYKTKQLKNNQFRATVEFNGMQFVGQP
CSNKKLAEKDAAAEALEWLMGGNSSGSRGIDAMSMLLKKSKNKHHRRV
NT seq
3567 nt
NT seq
+upstream
nt +downstream
nt
atgccctcctccgctctcctgcgggtctcgctccgctcccgcgctcgcctgaccatgtcc
cttacctcccttcgacctctccatttctcttctcgaaaccctaggaaccctagaaacaag
atgatgaagagcgggatatacgtgccgccgatcccgaggctgaggtcggtgatagccagc
gccaacggcacgattcatactgcgaggtcggtggattacgactggagggacgagggtttg
tcgtcgtacgtcaagcggcagcagagtgcgagctatgggaggtacgcttacgatgattac
tccgaggatgattcggatcgagatgtcgagtcttcgtctgtggcttcgaataagggtgcc
tccacacttgataatgttgatgagtggaagtggaaattaagtatgcttcttcgtaatgaa
cgtgagcaagaggtagtatccagggaaagaaaggacaggcgtgactacgagcaaattgct
gcagtagctgagagaatgggattgtacagtcgccaatatgcaaaagtcattgtttttagt
aaggtgccactgccaaactatagatcagatcttgatgataaaagacctcagagggaggtt
tccattcctactggattgcaaagggaagtgggtgctttacttggggattatcttgctcga
aagcagacaaacagagaaagctttccacatcttcccttttcgaggtcaagtagcactgat
agctttgccaacgatgagggactctttgagcagcaggacccacagactcctactagtact
gttatggagaaaatcttaaagcgaagaagtttacaactgcgcaatcagcaacaagcctgg
gaggaatcacctgagggtcaaagaatgctagaatttcgcagaagtcttcctgcttacaag
gagaaacaagcactattagaagccatatcccggaatcaggtagttgtcgtttcaggagaa
actggttgcgggaagacaacccaacttcctcagtacattttagaatctgagatagatgct
gctcgtggagcaacttgcagtatcatctgtactcagcctagaagaatatctgcgatggcc
gtctctgaaagagtagcagctgagcgaggggagaaattgggtgaatctgttgggtataaa
gttcgtctggagggtattaaagggagggatactcgcctacttttctgcaccacaggaatt
ttattgaggagactgctgattgatagaaacttgaaaggtgtaacacatgttattgtagat
gagattcatgaacgtggcatgaatgaagactttcttcttattgtcctcaaggagcttctt
cctcgtcgtcctgaattgaggttggttttgatgagtgcaactctcaatgctgagcttttt
tcctcctactttcacggggcacctatgatacacattcctggatttacttatccagtaaga
tcaaattttctggagaatgtccttgaaataactgggcataggctgaccccctacaatcaa
attgatgattatggacaagaaaaaagttggaaaatgcaaaagcaagcacttaggaaaagg
aaaagccaaattgcttctgccgtcgaagatgcactagagactgctgactttagagagtac
ggttctagaactcgtgattcactgtcatgctggaatcctgattcgattggttttaacttg
atagaagctgttttgtgccatatatgtcgaaaagagaggcctggtgcaattttagtgttt
atgactggatgggatgacataaattcacttaaagatcaactcctagcaaatccttttctt
ggagatccttccaaagttttgcttctagcatgtcatggttccatggctagctcggagcag
agattgatcttcgacaagccagaagatggtgtgaggaaaatagttcttgcaactaatatg
gcggaaacaagtattacaataaatgatgtagttttcgttgtcgactgtggaaaggcaaaa
gagacatcttatgatgctttgaataataccccttgtttgctcccaacttggatctctaag
gcttctgctcggcagagaagagggagagctggtcgtgttcagcctggagaatgttatcat
ctctatccaagatgcgtgtatgatgccttcacagattaccaattaccagaacttctaagg
acgcctctacaatctctctgtctgcaaattaagagtctaaggcttggtagcatctctgat
ttcctatctagggctttgcaatcaccagaacccttatcgatacaaaatgccatcgagtat
ttgaaagttattggggccttggatgataaggaagagttaactgttttaggacgatatttg
tcaatgcttcctgttgagccaaaacttggaaaaatgctcatttatggtgctatattcaac
tgcctcgatcctatattgactgttgttgctggtctaagtgtcagagatccatttttgaca
ccgtttgacaaaagggatcttgcagactctgcaaaatctcaattttcttgtcgagattat
agtgatcatcttgcacttgttcgagcttatgaaggttggaaggatgctgaaagagagcat
tctggttatgagtactgctggaagaattttctttctgcacaaacattaaaggctattgat
tctctgaggaaacaatttatttttctgcttaaggatactggtttggttgatgaaaatttt
agcacgtgtaacaagtggagtcgagatgagaacctcattcgtgcagtcatatgtgcgggt
ttgtatcctggtatctgttcagtcgtgaacaaggagaagtcaatagctttgaagacaatg
gaagatggtcaagtaatgctatattctaattcggtcaatggtcgggaggctagaattcct
tatccatggctagtgtttaatgagaaagtgaaggtcaattcagttttccttcgcgactca
acagcagtatctgatactgtgctgcttctctttggaggaaacatcacacaaggaggactc
gatggtcacttgaaaatgttggggggttacttggagttctttatgagacctgatctggca
tcaacatatctaggcctcaagagagaacttgatgagctactccataacaaacttctaaac
cctagaatggacatccaaactagcgaggagctcctagctgctgtccgtttactcgtcaca
gaggacccatgcagtggtcgctttgtatatggtcggcaacaactaacacccaagaaaacc
aaatccttgctctcagccaaatccagcggcggcggtggaggtgacaactccaagagccag
ctccagactcttctaacaagagcaggacatgataaccccatttacaaaacaaagcagctc
aagaacaatcagttcagagccactgttgagttcaatgggatgcaatttgtcggacaacct
tgcagcaataagaaacttgcagaaaaggatgctgcagccgaggcattggaatggttaatg
ggcggaaactcatcaggatctagaggcattgatgcaatgtccatgctgcttaaaaagagc
aaaaacaagcatcacagaagagtctag
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integrated database retrieval system
