Asparagus officinalis (garden asparagus): 109829895
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Entry
109829895 CDS
T05243
Name
(RefSeq) THO complex subunit 4B-like
KO
K12881
THO complex subunit 4
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03013
Nucleocytoplasmic transport
aof03015
mRNA surveillance pathway
aof03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109829895
09122 Translation
03013 Nucleocytoplasmic transport
109829895
03015 mRNA surveillance pathway
109829895
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aof03019
]
109829895
03041 Spliceosome [BR:
aof03041
]
109829895
Messenger RNA biogenesis [BR:
aof03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
109829895
TREX complex
109829895
Spliceosome [BR:
aof03041
]
Complex C
Other components
EJC/TREX
109829895
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
109829895
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
RRM_3
RRM_10
Motif
Other DBs
NCBI-GeneID:
109829895
NCBI-ProteinID:
XP_020252569
LinkDB
All DBs
Position
2:complement(2565271..2575541)
Genome browser
AA seq
240 aa
AA seq
DB search
MSSALDMSLDDIIKNSKKSSSSGGRGRGLGRSGPGPARRSQNRAANRPNPYSMPKAADYG
VYTDQIAAFSVPAASRVSSIETGTKLYISNLDYGVSNDDIKELFSEVGDIKRYSIHYDRS
GRSKGTAEVVFSRKDHALAAVKRYNNVQLDGKPMKIAIVGTNIEKPVAFPPVAHVNFGNP
SGIPQRLRGRGVPAGRPHGGGGRGQSRGGRGRGRGRDEKVSVEDLDADLDKYHREAMQVN
NT seq
723 nt
NT seq
+upstream
nt +downstream
nt
atgtcgagcgctctcgacatgtcgctcgacgacatcatcaaaaacagcaagaagtcctca
tcctccggcggccgcggccgaggtctcggccgctccggccccggccccgctcgccgttcc
caaaatcgcgctgcgaatcgtcccaatccttattcgatgcccaaggcggcggactatggt
gtctatacggatcagattgcggccttttcggttccggcagcgtccagggtttcttcgatc
gagacggggacgaagctttacatctctaatttggattatggcgtatcgaacgatgacatc
aaggaactgttttcagaggttggtgatatcaaaagatactcgatccattatgataggagt
ggaagatcaaaggggactgctgaagttgtcttctcgaggaaggatcatgctcttgcagct
gttaagagatacaacaatgtgcagcttgatggaaaaccaatgaagatagcaatagtcggc
acaaatattgagaaacctgtagcttttcctcctgttgcacatgtgaattttggaaatcct
tctggcattccccaaagactacgtgggagaggtgtccctgctggcagaccccatggtggt
ggtggtcgtggacagagtagaggaggtcgaggacgaggtagaggccgtgatgagaaggtg
tctgtcgaagatcttgatgctgacctggacaagtaccatcgagaagcaatgcaagtcaac
taa
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