Asparagus officinalis (garden asparagus): 109830541
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Entry
109830541 CDS
T05243
Name
(RefSeq) LOW QUALITY PROTEIN: probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109830541
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aof03041
]
109830541
Enzymes [BR:
aof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109830541
Spliceosome [BR:
aof03041
]
Complex C
Other components
Step II factors
109830541
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
NPHP3_N
Motif
Other DBs
NCBI-GeneID:
109830541
NCBI-ProteinID:
XP_020253412
LinkDB
All DBs
Position
2:complement(23809104..23867282)
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AA seq
696 aa
AA seq
DB search
MAELPILEFEDKILETVEANXGETGSAKEHPALQIIAPATKSGIIAITQPRRVAAVSVAR
RVAFELGVQLGEEVGYAIRFEDRTSDRTCIKYLTDGCLLRESLSNPELSQYSVIILDEAH
ERSLNTDILLGLMKRLIKERSSNLKVLITSATLDGVKVSNFFSGCPVLNIPGTLFPVGKL
YSTERPTSYLESSLKTALDIHIREPPGDILIFMTGQDDIEKTVSKLEERIQRLEEGSVMD
ALVLPLHGSLPPEMQVRVFGPAPPNCRRFIVATNIAETSLTVDGVVYVIDPGYVKQRQYN
PSTGMYSLEVVQISRVQADQRAGRAGRTRPGKCYRLYPASVYHEELLDATVPEIQRSSLA
GSVLYLKSLNLSDFDILKFDFLDPPSRESLEDALRQLYLIDAIDENGRTTNIGRTMAELP
LEPSLSRTLIEANGLDCLSQALTVAAMLSAETTLRPAFSKSKEKKRKEPLPKLPDGSGWG
DHIQLLQIYESWYRANYDPNWCADNDLQIRSMKFSRDVRKQLSQIIQKISKGPVDVKSGL
RHKKSDHDYQKLRRALCKGYGNQLAERMLHHNGYRTLGYRSQLIQVHPSSVLETDEDGQL
PDYVVYHELINSSRPFMRNVCAVEMSWVMPILRKIEKMDVNKLSGGFGALNEKETPEDKQ
EQLPEKEASGSTAPSDNVDSKIQAARERYLARKAKK
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
atggcggaactcccgattctcgagttcgaggacaagattctggagacagtggaggcgaat
nncggcgagactggctcggccaaggagcacccagctcttcagattattgcaccggctaca
aagtctggaatcatcgccatcactcagcctcgtcgagtcgccgccgtctctgttgccagg
agggttgcatttgaacttggcgttcagcttggtgaagaagtgggttacgctattcggttt
gaagatcgaacttcagatagaacatgtatcaagtatcttaccgatggttgtctccttcgt
gaaagcctgtcaaatccagagttgagccaatattcggttataatcttggacgaggctcat
gagaggagtttgaatactgacatattgctagggttgatgaaacgcttaatcaaggaacgc
tcgtcaaatctaaaggttctcatcacttcagcaactttggatggtgtcaaagtatcaaac
tttttctcaggttgccctgtgttaaacatacctggcacattatttcctgtggggaagctg
tatagcacagagcgtcctacgagttatcttgaatcttctctgaaaactgctttggatata
cacattcgtgagccacctggagatatcctaatattcatgaccggacaggatgatatagag
aaaactgtgtcgaagttggaggaaagaatccaacgccttgaggaaggttctgttatggat
gctctagttcttccgcttcatggctctttacctcctgaaatgcaggtacgtgtatttggt
ccagcacccccaaattgcagacggtttatagtagctaccaatatagctgagacttccttg
actgtagacggagtcgtgtatgtaattgatcctggttatgtgaagcagcgccaatacaac
ccatccacaggaatgtattctcttgaggttgtacagattagcagagtgcaagcagatcaa
cgcgctggacgagctggaagaactcgtccgggaaaatgttacagattataccctgcctct
gtatatcatgaggagttgcttgatgcaacagtgcctgaaattcagcgatcgtcccttgct
ggaagcgtactctatttgaagtctctaaatttgtccgactttgacatattgaagtttgac
tttctggatccaccatcacgtgaatctttggaggatgctctgaggcaattgtatctcatt
gatgcaattgatgaaaatgggcggacaacaaatatagggcgaactatggctgaacttcca
ctggagccttcgctctcaaggactttaattgaggcaaatgggctggattgtttatcccag
gctttgactgttgcagctatgctgtcagcagaaaccacacttcgtcctgctttcagtaag
agcaaggaaaagaagaggaaagagccacttccaaaattacctgatggttctggttggggt
gatcacattcaattgcttcaaatatatgagagttggtatcgagctaattatgatccaaac
tggtgtgcggataatgatctgcagatacgcagcatgaagttcagcagagatgttagaaag
cagttatcgcagataatacaaaagatttctaaaggaccagtggatgtaaaatcaggtttg
agacataagaaaagcgatcatgattaccagaagttgaggagagccttatgcaagggttat
gggaatcagctagccgagcgaatgctgcatcataatggctatcggacgcttggttatcgg
tcgcaacttatccaggtacacccatcttcagttctagaaactgacgaagacgggcaacta
cctgattatgtcgtctaccacgaactcataaattcctctcgtccattcatgagaaatgtt
tgtgcagttgagatgtcatgggtgatgcccattctaaggaaaatagagaaaatggacgtc
aacaagctcagtggtggttttggtgctttaaatgagaaagaaacaccagaggataaacaa
gagcaattgcctgagaaagaggctagtggtagcacagcgccttctgataatgtggacagc
aaaattcaggcagcccgtgaacgctatcttgcacgcaaagcaaagaaataa
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