Asparagus officinalis (garden asparagus): 109830694
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Entry
109830694 CDS
T05243
Name
(RefSeq) putative uncharacterized protein DDB_G0286901 isoform X1
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109830694
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aof03021
]
109830694
03019 Messenger RNA biogenesis [BR:
aof03019
]
109830694
Transcription machinery [BR:
aof03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
109830694
Messenger RNA biogenesis [BR:
aof03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
109830694
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NUFIP1
Motif
Other DBs
NCBI-GeneID:
109830694
NCBI-ProteinID:
XP_020253637
LinkDB
All DBs
Position
2:40400480..40411946
Genome browser
AA seq
514 aa
AA seq
DB search
MNNLNQGMPFNPNFDPQNNNLGNLSGANPNNFSGLNPNFNPRNNNLGSLNGGHPNNFNGM
NPNLQTMAQNNPLGVIQMLAAQIQSNPQIQMNLLNQLQAQNFGAPFQPFVGQNPNQMMGM
QNLQIFPPSQMLQGSQMMGFPGNPQLGMNNVGPGFGSVAFGQSPVHGPGSMKLEQPTSYN
NSVKAQCKPQASGSRQFQGNYIEANRCATSQSSANRGPVRTFHGSGKEPLHNRFQKSQLS
DMRGSKGNINQSNRRRGRGQNNRREQRSKPMDFSEAAPKVSVRSLPVNYTKHEIQLWREA
RKKNFPTRANMNKKTTKISNNEDADAKLRRQQLKEVLAKQAELGVEVAEIPPDYLSEPET
QVSKRKNEREGTYGGSGDRFNKGRGRGNGRDNRHSKRQKFQNKGASATPLPVKREPSLLE
KLLSSDIRRDKSQLLQVFRFMVLNDFFKQWPDKPLEFPIINVKDKGYSEEISDQKECCLV
EEMVNESIEDVTFDDNENGSREKIQESEEGEITD
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
atgaataatctcaatcaggggatgccattcaatcctaatttcgacccccaaaataacaat
ttgggaaatttgagtggagccaacccgaacaatttcagtggcctaaaccctaatttcaac
ccccgaaacaacaacttgggcagtttgaacggaggccaccctaacaatttcaatggcatg
aaccctaatctccaaaccatggcccagaacaacccgctgggcgttatccagatgttggca
gcgcaaatccagagcaatccccagattcagatgaatctgctgaatcagctccaagcccaa
aatttcggtgctccatttcagccatttgtgggtcagaaccctaatcagatgatggggatg
cagaacctgcagatctttcccccgagccaaatgcttcaagggagtcaaatgatgggtttt
ccagggaatcctcagttggggatgaataatgtgggtccgggttttggtagcgtagctttc
gggcaaagtcctgtacatggtcctggttcgatgaaactggagcagccaacgtcttataat
aattcagtgaaagctcagtgcaagccacaggccagtggaagtcggcagtttcagggtaat
tacattgaggctaatagatgtgcaacctctcaaagttctgcgaacagaggtcctgtaaga
acttttcatggttctgggaaagagccattacataacagattccagaaatctcaattgtct
gacatgaggggttcaaaaggaaacataaatcaatctaacaggagacgaggaagaggacaa
aataacaggagagagcagagatcaaaacctatggatttcagtgaagcagctccgaaagtt
agtgtgaggtcactcccagtaaactatacgaagcatgagatccaactgtggcgtgaagca
cgcaagaagaattttccaaccagagccaacatgaacaagaagactaccaagattagtaat
aatgaagatgcagacgcaaaattacgtcgccagcaattgaaggaagttctagctaaacag
gcagaattaggtgtggaagttgctgaaataccacctgattatcttagtgaacccgaaacc
caagtctccaagaggaaaaatgaaagagaaggaacatatgggggatcgggtgatagattc
aataaagggagaggcaggggaaatggccgagataatcggcattctaaaagacagaagttt
cagaataaaggagcatctgctactcctttgcccgtgaagagggaaccaagccttctcgag
aaacttttgagttctgatataaggagggataaaagccagttgctgcaagttttcaggttt
atggtcttgaatgattttttcaaacaatggcctgataaacccttggagtttccaatcatc
aatgttaaagacaagggatactctgaggagattagtgatcagaaagaatgctgtttggtt
gaagaaatggttaatgaatccattgaagatgtaacttttgacgataatgagaatggcagt
agagagaaaattcaggagtcagaggaaggggaaattacagattag
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