Asparagus officinalis (garden asparagus): 109830920
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Entry
109830920 CDS
T05243
Name
(RefSeq) CCR4-NOT transcription complex subunit 10-B-like
KO
K12607
CCR4-NOT transcription complex subunit 10
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109830920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aof03019
]
109830920
Messenger RNA biogenesis [BR:
aof03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
109830920
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF6591
Motif
Other DBs
NCBI-GeneID:
109830920
NCBI-ProteinID:
XP_020253864
LinkDB
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Position
2:complement(20787579..20788799)
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AA seq
406 aa
AA seq
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MALEKGLLGSKGEDIRVHVAGSGRWRQLVIDDLKSTDGYSNSENTNGCKLSLPFARYCLQ
NVLILLNKTEQKAIKSGDSVTALNQEESDQVKSGKNSTHKNASTGDSKANGDSKENKGTS
SSSSILQSSVSAYEDMRREENHMIRQAVLGALAYVELCLENPLKALSFSKSLLDLPECSK
IYVFLGHTYASEALCWLNRSKEAAEYLSVYLTDGNNVELPYGNEDREKWFSKRGANDFED
SNSSLPSKNNAEDTQSLMFLKPEEARGIVFANFSAMFAIQRDLEKASRFASEALALVPKH
PKALLAIAYVDLLQAPSLPVSPSTTPEFAAAPATFEPYSMVGRRRITKRKECMMPKKSQN
GGAAGTRPLFFFDKFDGGMAHGFGLRMPTFSLEDDSREKGLIVQFI
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atggctttagagaaggggcttttgggatcaaagggtgaagacataagagttcatgttgct
ggttcaggcagatggagacaattagttatcgatgatttgaagtcaacagatggatattct
aactcagaaaataccaatggatgcaagctctcccttccatttgctcgttattgtctgcaa
aatgtgttaatcttattgaacaaaactgagcagaaagcaattaaatcaggtgattcggtc
actgccttgaatcaggaggaatctgatcaggtaaaatccggcaagaattcaacccacaag
aatgcatcgacaggagactcaaaagcaaatggagattcaaaagaaaacaagggtacttcg
agttcatcctccatattgcagagctctgtttctgcatatgaggacatgaggagagaagag
aatcacatgattaggcaagcagttcttggagccctagcttacgttgagttatgcttagaa
aaccctttgaaagctctttctttttcaaaatcactcctcgatcttccagaatgttccaaa
atttatgtctttctcggtcacacttatgcctctgaagcactttgttggctgaaccgatct
aaagaagcagcagaatatttatcagtatacctcacagatggcaacaatgtcgaattgcct
tatggtaatgaggatagagaaaagtggttctcaaagagaggggctaatgattttgaagat
tcaaacagttctttgccttctaaaaataatgccgaagatacccagagcttgatgttcttg
aagcctgaggaggctcgtgggattgtttttgctaatttctcagcaatgtttgcaattcaa
agagatcttgaaaaggctagcagatttgcttctgaggctctagctttagttcctaagcat
ccaaaagctttgcttgcaatagcatatgtcgatctcttacaagcgccgtcgctccccgtc
tcgccctcgactacgccggagttcgccgctgcgcctgccacttttgaaccctatagtatg
gtaggccggaggaggataaccaagagaaaagagtgcatgatgcccaagaaaagtcaaaat
ggaggggctgcaggcacaaggccactctttttttttgataaatttgatggtggcatggca
catggttttggtctgcggatgcccacattttcacttgaagatgatagcagagaaaaaggt
ttgatagttcaattcatttag
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