Asparagus officinalis (garden asparagus): 109831483
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Entry
109831483 CDS
T05243
Name
(RefSeq) LOW QUALITY PROTEIN: uncharacterized protein LOC109831483
KO
K19022
AP-5 complex subunit beta-1
Organism
aof
Asparagus officinalis (garden asparagus)
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aof03400
]
109831483
DNA repair and recombination proteins [BR:
aof03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AP-5 complex
109831483
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AP5B1_middle
AP5B1_C
AP5B1_barrel
Motif
Other DBs
NCBI-GeneID:
109831483
NCBI-ProteinID:
XP_020254406
LinkDB
All DBs
Position
1:19683562..19692243
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AA seq
1109 aa
AA seq
DB search
MERQSSTKPQPLPNLSPQEWETLIEDFQNPNAALAFPVHNPSHPRPRSPHPIARSRGPPP
SPSAFNLLLLFEDAAVASSSSSAAAAIVDPLRSFLASDHPPSLKDQFLISATSIFITTLD
DEVAGVEPLVEILLAVANRPNHGXXXXXCLRELELAFPCLLSSVTGHLWSLAQSERTHAS
QSYILLLAAVVKNVVKYGLLSSTSSVLSSKMTLLPFNVPQSLFEEGEGERNLRPTDQNLR
EIRRVMAFLLERPQGLTPQGTMHLVSMLVEIAGALESYIPAVASLLKVQFSGMICSYDPL
LCHAVLVLHSRFPDDELGIAKRLALIPKDVHHPLVFRILAIHWLMGSPMIVSGKESLVKM
VPSFYPSVFDPLALKASKLDAMAHVAAKIEEDGDKEKVSVVKLFEDGLVCVSGFKWLPPS
STETAVAFRTLHKFLIGVAPHRNISLTFNRFGNLVGSTIFCTLKVMLVKLAREHRGLVPV
IATFVDRLLQCKAHREVGERLLQTFDEHLLPKLETNYRLTSYFPIFERIGSSDAVPPRGL
LELLAKHIVFLVEKHGPDTGLQSWSQGSKVLGICRLMLKHHHSSRVFVGLSHLLAFTCQY
FPDLEVRDNARIYLRMLLCIPGKKLRHILDLGGQTPGMAAPHPGSFFQVPSPQPSQDLKK
FSGLPSYIHLERVIPLVVKQTWSLALPNLDTGNNEVSVFVGIGNVTVPPTQSGEDNAKPT
EPERDSEVSLERISLPPEPLRVMDSKVAEIVEVLRRHFACIPDYRHMSPIKISIPCILSF
ESEPFSCIWEVDSSALGLDGVDGLPALYAITLTFSSSAKYGSIPPARVPFLLGEPPKTGS
EIVPVGNDLEENSSFRALVTIELEPREPMPGLVDISIKANVENGQIVSGSLQSVSVGIED
MFLRASLPPDVTDEIPEYYLDLFHALWEACGNSANTGRETFSLSGGKGVAAISGTRSVKL
LEITPDSLINSIERYLAPFVVSIIGEPLMDMVKNHGIIRNILWGDDSDSFSQPRADALVP
YSETDNLVPYSEDKPLQLEYDRDVPDTRSVRSIGKRNMGIILVLIFLPPRFHLLFQMEVG
EVTTLVRIRTDHWPCLAYVDEYLESLFLS
NT seq
3330 nt
NT seq
+upstream
nt +downstream
nt
atggagaggcaatcctcaaccaaaccccaacccctccccaatctctcccctcaggaatgg
gaaaccctaatcgaagattttcagaatccaaatgccgctctcgcgtttcccgtccacaat
ccctcccatcctcgacctcgctctcctcatccgatcgcccgcagcagaggacctcctcct
tctccctccgcattcaatctcctcctcctcttcgaagacgccgccgtcgcctcctcctcc
tcctccgccgccgccgccatcgtcgaccccctccgttcctttctcgcctcggaccaccct
ccctcgctcaaagatcagttcttgatctcagccacctccatcttcatcacaaccctcgat
gatgaagtcgcgggggttgaacccttggttgagattctgctcgcggtcgcgaacaggccg
aatcacggcnncnnnnnnnnnnagtgccttcgcgagctcgagctcgcctttccttgcctt
ctgtcctcggtcactggtcatctctggtctctcgctcagagcgagcggacgcacgcttct
caaagctacatccttttgcttgccgcggttgtcaagaatgtggttaagtacggattgcta
tcgtccacgagctcggttctgtcgagtaaaatgactctattgccatttaatgtgcctcag
tccttgtttgaggagggagaaggggagaggaatttgaggccgacggatcagaatttgagg
gagattcgacgggttatggcgtttttgcttgaacggccgcaagggttgactcctcagggg
accatgcatctggtttcgatgctggttgagattgctggagctctggagagctatattccg
gcagtggcttctctgttgaaggtgcagttctcggggatgatttgttcgtatgatcctttg
ctgtgccatgctgttcttgtgttgcattcgaggtttcctgatgatgaattagggattgcg
aagaggctggctttgatacccaaggatgttcatcatccactcgtgtttaggattttggca
attcattggcttatgggttcgccgatgattgttagtgggaaggagtctcttgttaaaatg
gtgcctagcttttatcctagtgtttttgatcctttagcattgaaggcttctaaattagat
gcaatggctcatgttgctgcgaagattgaggaggatggagataaagagaaagtttcggtg
gtgaagttgtttgaggatggattggtttgtgtttcgggttttaagtggttacctccgtcg
agtactgagacggctgtggcctttaggacccttcacaagttcttgattggagtggcacca
catcgtaatattagtttgaccttcaataggtttggtaatctcgtaggatctactattttc
tgcactttgaaggtcatgttggtgaagctggcacgggaacatcgaggattggttccagtg
atagccacttttgtcgataggttgttgcaatgcaaggcccatagggaggtgggagagagg
ttgcttcagacatttgatgaacatttgctccctaaactcgaaacaaattatcgtctgact
tcatatttcccgatctttgagagaattggttcaagtgatgcggtgcctcctcgtggccta
ctggagttgctcgctaagcatatcgtctttctcgtagagaagcatggcccggatactggg
ttgcaatcatggtctcaaggaagcaaagttttaggcatttgtagattgatgttgaagcat
caccatagttccagagtgtttgttggtctctctcacctccttgctttcacttgccagtac
tttcctgacttggaggtccgagacaatgctaggatttacttgaggatgcttctttgtatt
ccggggaagaagctccggcacattctcgatctcggtggtcagactccaggaatggctgca
ccccacccgggttcattctttcaggttccttctcctcaaccttcacaagacctcaagaag
ttttcaggactgccttcatatattcatctcgagagagtcatcccattagttgtcaaacaa
acatggtcattagcattacctaatttggacactggaaacaacgaagtcagtgttttcgtt
ggcataggaaatgtcactgttcctcctacacaatcaggagaagacaatgccaaaccaaca
gaacctgaaagagatagtgaagttagtttagagaggatcagcctgccaccagagccacta
agggtgatggattcaaaggttgcagaaatagtagaagtcctaaggaggcattttgcatgt
attccagattatcgacacatgtctcccataaaaataagtattccttgcatactgtcgttc
gaatctgaaccatttagttgtatatgggaagttgattcgtctgccttgggcttggatggg
gtagatggtttacctgccttatatgcaattacactcactttttcatcctcagcaaaatat
gggtcaattccacccgctcgagtcccttttcttctcggtgagcctccaaagactggatct
gagatagtgccagttggaaatgatttggaggaaaactcaagtttccgagcattggtgacc
attgagctggaacctcgagaaccaatgcctggcctggttgatatttcaatcaaggcaaat
gtcgagaatgggcagattgtctctggttcacttcaaagtgtctctgtaggtattgaggat
atgtttctcagggctagcttacctcctgatgtgacagacgagattcctgagtactatttg
gatctatttcatgctttatgggaagcttgtggaaattctgcaaatacaggacgtgaaaca
ttttcactgagtggagggaaaggggttgccgcaattagtggcacgagatctgtgaagctt
cttgaaataactcctgactctttgatcaattctattgagagatatctagctccctttgtt
gtcagtattattggtgagccactcatggatatggtaaagaatcatggtattatcagaaat
attttatggggggatgattctgatagtttttctcaacctagagctgatgctttggtacca
tattcagaaaccgataatctagtaccatattcagaagacaaacctcttcagcttgagtat
gatcgagatgtacctgataccagaagtgttcggtctattgggaagaggaacatgggtatt
attcttgttttgattttcctgccaccaagattccatctccttttccagatggaagtaggt
gaagttacaacattggttcgaatcagaacagatcattggccatgccttgcttatgtggat
gaatatttggaatctctttttttgtcataa
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