Asparagus officinalis (garden asparagus): 109831754
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Entry
109831754 CDS
T05243
Name
(RefSeq) sm-like protein LSM5
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03018
RNA degradation
aof03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109831754
09123 Folding, sorting and degradation
03018 RNA degradation
109831754
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aof03019
]
109831754
03041 Spliceosome [BR:
aof03041
]
109831754
Messenger RNA biogenesis [BR:
aof03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109831754
mRNA degradation factors
5'-3' decay
Lsm complex
109831754
Spliceosome [BR:
aof03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
109831754
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
DUF7452
Motif
Other DBs
NCBI-GeneID:
109831754
NCBI-ProteinID:
XP_020254744
LinkDB
All DBs
Position
2
Genome browser
AA seq
87 aa
AA seq
DB search
MSHNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR
RVTKLDQILLNGNNIAILVPGGSPDPE
NT seq
264 nt
NT seq
+upstream
nt +downstream
nt
atgtctcacaacccatcacaacttcttccttcagagctgatcgatcggtgcattggatcg
aagatttgggtgataatgaagggggacaaggagctcgtcggaaccctaaggggcttcgac
gtctacgtcaacatggtcctcgaggacgtcactgagtatgaaattacagctgaagggcgc
cgggtcaccaagttagaccagatattgctgaatggaaacaacattgccatcttggtccct
ggtggttctcctgacccagaatga
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