KEGG   Asparagus officinalis (garden asparagus): 109832502
Entry
109832502         CDS       T05243                                 
Name
(RefSeq) LOW QUALITY PROTEIN: UBP1-associated protein 2B-like
  KO
K12741  heterogeneous nuclear ribonucleoprotein A1/A3
Organism
aof  Asparagus officinalis (garden asparagus)
Pathway
aof03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:aof00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    109832502
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:aof03019]
    109832502
   03041 Spliceosome [BR:aof03041]
    109832502
Messenger RNA biogenesis [BR:aof03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     109832502
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     109832502
Spliceosome [BR:aof03041]
 Common components
  Common spliceosomal components
   hnRNP proteins
    109832502
SSDB
Motif
Pfam: RRM_1 RRM_7 NMB0537_N
Other DBs
NCBI-GeneID: 109832502
NCBI-ProteinID: XP_020255443
LinkDB
Position
3:complement(3102157..3103151)
AA seq 302 aa
MAMAAANLNKKRKPDQESELLHETPKPAISYIPKHDNSDDDSDDDITGLLEPLNRDQLLS
LLRSAALAHPPTLAAVRSVADLDPSHRKIFVHGLDYSTTAESLXXADDVRIVTDKATGRS
KGYGFILFRHRKSARKALKQPQKLIDGRMTGCQLASMGPSSSGNAATAANPNSADNLARK
VYVGNVHQDIDVVRLRAFFAQFGEIEEGPLGLDRATGKPKGFALFVYKTLEGARKALEEP
SKNFEGHLLSCNRASDNSSRVATRGPTGPQMPNPGLNPSFNPNPNPNPNSMQNVAAAITG
SE
NT seq 906 nt   +upstreamnt  +downstreamnt
atggcgatggcggcagcaaacctcaacaaaaagaggaagcccgatcaagaatccgagctc
ctccacgaaaccccgaagcccgccatctcctacatccccaaacacgacaactccgacgac
gactccgacgacgacatcaccggcctcctcgaacccctcaaccgcgaccagctcctctct
cttctccgctccgccgccctcgcccatcctcccacgctcgccgctgtgcgctccgtcgcc
gacctcgacccctctcaccgcaagatcttcgtccacggcctcgactactccaccaccgcc
gagtcccttnncnctgccgatgacgttcgaattgttactgataaggccacggggagatcg
aaagggtacggatttatactgtttaggcatcggaagtcggcgaggaaagcgctgaagcag
cctcagaagcttattgatgggaggatgactggttgtcagcttgcttcgatgggtccttct
tcttcggggaacgcggctacggcggcgaaccctaattcggcagataatttggcgaggaaa
gtttatgtggggaatgtgcaccaggatattgatgttgtgagattgagggctttctttgcg
cagtttggggagattgaggaggggccactggggctcgatagggccacaggcaagccgaag
gggtttgctttgtttgtgtacaagactttggaaggggcgaggaaggctttggaggagcca
tcgaagaatttcgaggggcatttgcttagttgcaacagggcttcggataatagcagtaga
gtagcaaccagggggcctacaggaccacagatgcctaaccctggtttaaaccctagtttc
aatcctaacccgaaccctaaccctaattctatgcagaatgtggcggcggccattactggg
tcagag

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