Asparagus officinalis (garden asparagus): 109832647
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Entry
109832647 CDS
T05243
Name
(RefSeq) LOW QUALITY PROTEIN: protein RAE1-like
KO
K14298
mRNA export factor
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
109832647
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aof03019
]
109832647
03036 Chromosome and associated proteins [BR:
aof03036
]
109832647
Messenger RNA biogenesis [BR:
aof03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
109832647
Chromosome and associated proteins [BR:
aof03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
109832647
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
WDR55
Beta-prop_TEP1_2nd
Beta-prop_RIG_2nd
EIF3I
Beta-prop_CAF1B_HIR1
ANAPC4_WD40
Beta-prop_EML
Beta-prop_SPT8
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
NBCH_WD40
WD40_MABP1-WDR62_1st
Beta-prop_Nup120_160
Beta-prop_DCAF12
Beta-prop_IFT122_1st
WD40_RFWD3
Motif
Other DBs
NCBI-GeneID:
109832647
NCBI-ProteinID:
XP_020255625
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All DBs
Position
3:complement(2930895..2943439)
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AA seq
340 aa
AA seq
DB search
MALSGMGSAGNVNPNKSYEVTPAPNDSVSSLSFSPKANYLVATSWDNQVRCWEIMAGXXX
XSHDQPVLCSTWKDDGSTVFTGGCDKIVKMWPLLSGGQPTQVAAHDAPVKEVAWIEQMNL
LVTGSWDKTLRYWDLRQAQPVHTQQLPERCYALTVRYPLMVVGTADRNLIVYNLQTPQTE
FKRIVSPLKYQTRCVAAFPDQQGFLVGSIEGRVGVHHLDDAQQGKNFTFKCHREGTDIYS
VNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAMARCCHPIPCSTFNNDGSIFAYAVC
YDWSKGAENHNPATAKTYIYLHSPQEAEVKGKPRVTTGRK
NT seq
1023 nt
NT seq
+upstream
nt +downstream
nt
atggcgctctctggaatgggctcagcagggaatgtgaaccctaacaagtcttatgaggtc
acacctgcacccaatgactctgtatctagccttagttttagtcctaaggcaaattacttg
gtggccacttcttgggataatcaggttaggtgctgggagattatggcggggnnnnnnnnn
ntatctcacgaccaaccggttctatgctctacttggaaggatgatggctccacagtgttt
actggaggatgtgataagattgtgaaaatgtggccattgttgtctggtggccaacctacg
caagtcgctgcacatgatgcacctgtcaaagaagttgcttggattgaacagatgaatttg
ttagttacgggcagctgggataagacattgaggtactgggatcttaggcaagcacagcct
gttcacacccaacagcttcccgagcgttgctatgcactgaccgtgcggtaccccctgatg
gttgttggaactgctgatcggaatttgatagtctacaatctgcaaaccccacagactgaa
ttcaagaggattgtttcacctttgaagtatcagacaagatgtgttgctgcatttccagat
caacagggatttttggtgggatcaatagaaggaagagttggtgtacatcatctggatgat
gcacagcaaggcaagaacttcacattcaaatgccacagggaagggaccgacatatattct
gtgaactcactgaacttccatccagtacatcatacttttgcaactgctggctctgatggc
gcattcaatttttgggataaggacagcaaacagaggctgaaggctatggctagatgctgt
catccgatcccttgcagcacctttaacaatgatggatcaatttttgcctatgcggtctgc
tatgattggagcaaaggtgctgaaaatcataacccagcaactgcaaagacatatatctat
cttcatagcccacaggaggctgaggtcaaaggaaaaccacgcgtcacaactggtaggaag
tga
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