Asparagus officinalis (garden asparagus): 109832659
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Entry
109832659 CDS
T05243
Name
(RefSeq) LOW QUALITY PROTEIN: nuclear pore complex protein NUP96
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
109832659
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aof03019
]
109832659
03036 Chromosome and associated proteins [BR:
aof03036
]
109832659
Messenger RNA biogenesis [BR:
aof03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
109832659
Chromosome and associated proteins [BR:
aof03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
109832659
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup96
Nucleoporin2
Motif
Other DBs
NCBI-GeneID:
109832659
NCBI-ProteinID:
XP_020255642
LinkDB
All DBs
Position
3:complement(3103693..3113587)
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AA seq
1042 aa
AA seq
DB search
MAFAPSISPSETSNESLKTEGECCFGHYDDQQMDEEKFNLPLCVKFKKRRLSCNGDVKPS
LPILRSSEYYMKPSADEMVAREVLDCGYCSRVPNXXXXXVKFLSDTDVRWLNMDNIVKFN
RHSVSVYDNEDEKPPVGRGLNKAAEVTLILQLNLFGSRQLDLDKIITSLRKSSERQGAEF
LSFDCRTGEWKFLVQHFSRFGLDDDEEDDIVMDDVVVHSSAAQRAHLGLDPVKMQEMRML
MFPGDEEDEELHDSFSPDKRLFGREYIRADSPSASGKSPMCISPLQVSSQKTNSKGHKSP
LRKSPIPLLEYNVNNGESNPSRSIFMTGQSKGLQMRAEKVKGFKLEEKHMTPLKGQHSHN
VVDAALFMGRSFRVGWGPNGTLVHSGTPVGNIGTGLSSLIHIEKVAVDQIVRDEKNKVKE
ELVDLCFSTPLNLHKSLDRETTEVNTGIFKLNLQKVVCSRMMLSDICRAYIGILEKQLEV
SNLTTATRVLLMHQVTIWELIKVLFSERETIGDLISQSDDDDDDEEMMLDKRDVSSVVDP
EASPLVRRAGFSYWLQDSVCHKVQEEVSYLNDSSDLEHILVLLTGRQLDAAVELASSRGD
VRLAILLSQAAGSVVNRSDMARQLDLWRDNGMDFKYIENDRLKLYELLAGNIQGAVQDSK
VDWKRFLGLVMWYQLPPDTALPVIFHAYQQLLTEGRAPPPVPVYIDEGPLEDAVDWSSGD
RFDIAYYLMLLHANGDKAFELLKTMFSAFASTHDPLDYHMIWHQRAILEAIGVFDSNDLH
VLDMSFISQLLRLGQCHWAIYVVMHMPHLEESPHIHANLIKEILLQYCETWNEHEIQRQF
IEDLGIPSEWLHEALAIYYQYHRDLPKALQHFLECSNWQKAHSIFMTSVAHSLFLSSKHS
EIWRITSLMEEHKSEIADWDLGAGIYIDFYTIKASLQEDDAMYDADPLEKKNETCRNFFI
RLNDSLLVWKNKLPVDARATYSKMAEELCTLLASTPGEASTPVVQMNCFETMLSAPIPED
IRSYHLQDALSVFTYLLAETAS
NT seq
3129 nt
NT seq
+upstream
nt +downstream
nt
atggcgttcgccccttcaatcagccccagcgaaacttcgaatgagagcctgaagacagaa
ggtgaatgttgtttcggacattatgatgatcagcaaatggatgaggaaaagttcaatctt
ccactgtgcgtcaagttcaagaaaagaagattgtcttgtaacggagatgtgaaaccttct
ctacctatattacgctcttcagagtattatatgaaaccttctgctgatgagatggttgcc
agagaggtccttgattgtggttattgtagcagagtacccaacnnttnnnnnnnnnnggtt
aaatttctcagcgatacagatgttagatggttgaatatggataatattgtcaagtttaat
aggcattctgtttcggtatatgacaatgaggacgagaagcctccagtgggtcgtggacta
aacaaggcagctgaagtaactcttatccttcaactgaacttgtttggttcaaggcaactg
gacttggataaaatcattaccagtttgaggaaaagcagcgaaagacagggagctgagttt
ctttcatttgactgccggaccggtgagtggaaatttttggttcaacatttcagtaggttt
ggattggatgacgatgaagaagatgatattgtcatggatgatgttgtcgttcattcaagc
gcagcacaacgcgctcacctcgggcttgatcctgtgaagatgcaggaaatgagaatgttg
atgtttcctggagatgaagaggatgaagagcttcatgattcattttcacccgacaagaga
ttgtttggaagagagtatattagagcagattcacccagcgcaagcggtaaaagtccaatg
tgtatatctcctttacaagtttcctcacagaaaacaaacagtaagggccataagtccccg
ttaaggaaatccccaatacctttactagagtacaatgtaaataatggggaatcaaaccca
tcaagaagcatttttatgacaggccaaagcaaaggtttgcaaatgagggcagaaaaggta
aaaggttttaagctggaagagaagcatatgactcctctaaaaggacaacattcacataac
gtagtcgatgctgctttgtttatggggagatcatttcgtgtggggtggggaccgaatggc
acccttgtccactctggcacacctgtgggcaatattggaactggattgtcttctttgatt
cacatagaaaaagttgcagtcgatcaaattgttagggatgaaaagaataaagttaaagag
gagctagttgatttgtgcttctctacgcccctaaatctacataagtcattagaccgtgaa
accacggaagtcaacactgggatcttcaaattaaacctgcaaaaagttgtatgtagcagg
atgatgctatcggacatatgccgagcttatattggaatacttgagaaacaacttgaggta
tctaatttaactacagctactcgtgtgcttttgatgcatcaagtcacaatttgggaattg
attaaagttttgttctcagagagagaaacaattggagacttgatatctcaatctgatgat
gatgatgatgatgaggaaatgatgcttgataagagggatgtgtcttctgttgtagatcct
gaagcaagtcccttagttcgaagagctggttttagttattggttgcaagatagtgtgtgt
cataaggtacaggaggaagtgagttatttaaatgattcgagtgatttagagcacatactt
gtccttctgacggggcggcaactagatgcagctgttgagctggcttcttctagaggagat
gtacggctagctattttgctgagccaggctgctggatccgtggttaatcggtctgacatg
gctcggcaacttgatctatggagagataatggaatggacttcaaatatattgagaatgat
aggttaaagttatatgaattacttgcgggtaacatccaaggtgctgttcaggattctaaa
gttgactggaagagattcctcgggctggtaatgtggtatcaactaccgcctgataccgct
ctacctgtcatttttcatgcttatcagcaacttctcactgaaggaagagctccccctccc
gttcccgtttacattgatgaagggccacttgaagatgctgtagactggagttcaggtgac
cgctttgatatagcatattatctcatgcttcttcatgccaatggagacaaggcatttgag
ctgctaaaaacaatgttcagtgcctttgcttcgacacatgatccacttgattaccacatg
atctggcatcaacgtgcaattttggaagctattggtgtatttgattcaaatgatcttcat
gtgctggacatgagtttcatttcccagttgcttcgccttggtcagtgccattgggcaatt
tatgttgtcatgcacatgcctcatctggaagaatctccccatatccatgccaatcttatt
aaagaaattttattgcaatactgtgaaacatggaatgaacatgaaatacagcggcagttc
attgaagaccttggaataccatcagaatggttgcatgaagctttggcaatatattatcaa
taccatcgagatttgccaaaagccctacaacattttcttgaatgctcaaattggcagaaa
gctcactccattttcatgacctcagtagctcattcattgtttttatcatctaaacattca
gagatatggaggataacaagcttaatggaagagcacaagtctgaaattgctgactgggat
ttgggtgctggaatctatattgatttctacactataaaagcctctttgcaagaagatgat
gccatgtatgatgcggatccactggagaagaaaaacgaaacatgcagaaatttctttatt
cgcttgaacgattcattattggtttggaagaacaagttacctgttgatgcaagggccacc
tactcgaaaatggctgaggagctgtgtactctactggcatccacgcctggcgaggcatcg
acaccagtagttcaaatgaactgctttgagacgatgctaagtgctcctatccctgaagac
atccgatcttatcacttgcaggacgcgctctcggttttcacctatttgctagcagagact
gcttcttga
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integrated database retrieval system
