Asparagus officinalis (garden asparagus): 109833077
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Entry
109833077 CDS
T05243
Name
(RefSeq) uncharacterized protein LOC109833077
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109833077
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aof03019
]
109833077
Messenger RNA biogenesis [BR:
aof03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109833077
mRNA degradation factors
5'-3' decay
Decapping complex
109833077
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
109833077
NCBI-ProteinID:
XP_020256219
LinkDB
All DBs
Position
3
Genome browser
AA seq
821 aa
AA seq
DB search
MRGVEGDGVELGNPNLGVDFKELDSSSTDNARFDASQYAFFGGKNVVKEVELGGLEDDDG
NGAGLVGPNDKEYHFSSMEDREEGEILRSLSDIDDLASTFAKLNRNISEPRNTGVIGDRG
SFSRGSSSTADWTQETGDFSNWLDQQILDAENVQDGKRWWSQPHISGPRFAEVKPLHRTS
SHPQPLPQQQHSSDPVLAPKSSFTLLPSPGVGRSQVLSRHASIPSTLQIPYTTPNISQFS
PQLHLADLSNGLPYGGNIAQFAPGLSISGRHQNQWLNQASLFTGENPNLLSNMLQHQLSL
PNGLLPSQLLSKQQQRLQQIQPSFPHFPHLQSQLFNSHPPSPHLMNKFDAIFGMADLREH
REHRPKSSSRGRQNKRFSQHSSENGSQAGDTPLTQFRSKYMTSEEIESILRMQHAATHSN
DPYIDDYYHQACLAKKISGCRMKHQFCPSSIRDLPSRSRNNNEPHAYLQVDALGRVPFSS
IRRPRPLLEVDLPSSGDGILEQKSSVKPLEQEPMLAARIAVEDGLCLLLDVDDIDRLLQS
SQIQDAGTQLRRRRQVLLEGLAASLQLVDPLGPGKSGHSVGPAPKDDLVFLRLASLAKGR
KLLSRFLQLLYPGTELARIVCMAIFRHLRFLFGGLPSDSSAAETTADLARVVSSCVHGMD
LSALSACLAAVVCSSEQPPLRPLGSSAGDGASIIIKSVLERATDLLIDPHAASSYSMSNR
SLWQASFDAFFGLLTKYCLSKYDSIMQQLLTQSPNTVVIGSEMSRAISREMPVELLRASI
PHTDDQQRKQLLDFAQRSMPITGYSAHGGSHGPITSESVPG
NT seq
2466 nt
NT seq
+upstream
nt +downstream
nt
atgaggggagttgagggagatggcgtggaattggggaaccctaatttgggcgtggatttc
aaggagttagatagcagtagcacagataatgctcgctttgatgcctcacaatatgcattt
tttggtggcaaaaatgttgtgaaggaagttgagttaggcgggttagaagatgatgatggt
aatggtgctgggttggtcgggcccaatgacaaggaatatcatttttcttctatggaagac
agggaggagggggagattttaagatctttatctgacattgatgatctcgcaagcaccttt
gcaaagttgaatagaaatattagtgaaccaaggaacactggagttattggtgatagaggc
tcattctcgagaggaagttcatctactgcagactggacacaggagacgggagacttttca
aactggctagatcaacagattctagatgctgaaaatgtgcaggatggtaagcgatggtgg
tcacaaccgcatatttctggtcctcggtttgctgaagtaaaaccactgcatagaacatcc
tcgcatccgcagccactaccccaacaacagcactcaagtgatcctgttcttgcacccaag
tcttcttttactttgctaccctcacctggtgttggtcgatctcaagttctatcacgccat
gctagcataccttcgactctccagataccctatactacccccaatatctcacaattctct
cctcaacttcatttagccgatttgtccaatggtctaccttatggtggaaacatcgcgcag
tttgctccaggcctctccattagtggtaggcaccagaaccagtggttgaaccaggctagt
ctatttactggcgagaatcccaatttgttgtctaacatgttacaacaccagttatctctt
ccaaatgggttattgccatcgcagctgttgtcaaaacagcagcagagattacagcaaatt
cagccatcttttccccactttccgcacttgcagtctcaactattcaactcgcatcctccg
tctcctcacttgatgaacaaatttgatgccatatttgggatggctgatcttagagaacat
agagaacatagaccaaaatcttcttccaggggaagacagaataagagattttctcaacac
agttcagagaacggcagccaggcaggtgatactcctctgacgcaattcagatcgaagtac
atgacatctgaagaaattgaaagcattctaaggatgcagcatgctgcaactcacagtaac
gatccttacatagatgattattaccaccaagcttgcttagcaaaaaaaatttctggttgt
cggatgaaacatcaattctgtccttcatctatcagggatttgccatctagatctcgcaat
aataacgaaccacatgcatatcttcaagttgatgctttgggaagggtcccattttcttct
atacgtagacctcgccccctccttgaagttgatctgccatcatctggagatggaatccta
gagcaaaaatcttcagtgaagccccttgagcaagagcctatgttggctgccagaattgct
gttgaagatgggctctgtcttctccttgatgtagatgatattgaccgcctattacagtcc
agccagatacaagatgctggaactcagctgagacgaaggcgtcaggtccttctagaaggt
cttgcagcttcacttcagctagttgatccacttggcccaggtaaatctggacattctgtt
ggtcctgcaccaaaggatgatcttgtgtttcttcgactagcctctcttgccaagggtcga
aagcttctttctcgcttccttcagcttctgtaccctggaaccgagcttgctagaattgtt
tgcatggcaatattccgtcatttaaggtttttatttggcggtcttccctctgattcaagc
gcagctgaaacaacggctgatcttgctagggtcgtgtcttcatgtgttcatggaatggat
ctcagtgctctcagtgcttgccttgctgctgtggtttgttcttccgaacaaccacctctc
cggccattaggaagttctgcaggtgatggagcctctattattataaaatctgttttggag
agagcaactgacctacttattgatccacatgctgccagcagctacagcatgtccaaccga
tctttgtggcaagcatcctttgatgcgttttttgggcttcttacaaaatattgtctcagt
aaatatgacagtataatgcaacaattgctcacgcaatcacctaacactgtggtcattggg
tctgagatgagtagagctataagcagagagatgcccgtggaactgctacgagcaagcatt
cctcatactgatgatcaacagcgtaagcagttacttgattttgctcagaggtccatgcca
attactggatatagtgctcatggaggtagtcatgggcctataacttctgaatcagtgcct
ggttaa
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