Asparagus officinalis (garden asparagus): 109833086
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Entry
109833086 CDS
T05243
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109833086
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aof03019
]
109833086
03012 Translation factors [BR:
aof03012
]
109833086
Enzymes [BR:
aof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109833086
Messenger RNA biogenesis [BR:
aof03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
109833086
Translation factors [BR:
aof03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
109833086
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
R3H
Helicase_C
OB_NTP_bind
DEAD
HA2_C
HA2_N
ATPase
nSTAND3
AAA_23
Ank_5
Ank_2
AAA_22
AAA_19
Rad17
AAA_7
ABC_tran
PhoH
FtsK_SpoIIIE
Motif
Other DBs
NCBI-GeneID:
109833086
NCBI-ProteinID:
XP_020256228
LinkDB
All DBs
Position
3:13714729..13741722
Genome browser
AA seq
1215 aa
AA seq
DB search
MGRNGPKKSKGGGGQQQGSVSEATRIRIGKILEEFRASDAQVHTFEPGMSKQERAAVHQM
CRKMGMLSKSSGYGDRRCLSAYKTKKNQKANKDEEMATCLTLSEEAKYVLQDLFSCHPPD
DGELTEGALENRSEAASRVRKLDSSFCRPKMRKGEIAKKVELLAKRMNGDPHLRKIAENR
SKLPIASFKDVITANLETHQVVLIAGETGCGKTTQVPQYILDHIWGKGETCKIVCTQPRR
ISAISVADRISYERGENVGDTVGYKIRLESKGGKQSSIMFCTNGVLLRLLISRGTNATNG
ETATKPLTDGLQGITHVIVDEIHERDRFSDFMLAIFRDLLPVCPHVRLILMSATIDAERF
SQYFGGCPIIQVPGFTHPVKSFYLEDVLSILRSADDNHVNLADLSSMEDVTSLTEDYRAA
LDESIDLALSSDEYDPLLELLSSKQTLKVYNYQHSLTGISPLMVFSGKGRVGEVCMLLSF
GADCFLTAKDGSSALDWAQRENQQQVYDIIKKHLEKDSSKLAEEEELLEEYLSSINPELI
DTVLIERIVKRICTDSKEGAILVFLSGWDDINQTRERLLGSPFFADSSKFIIFSLHSMIP
SSEQKKVFKRPPSGVRKIILSTNIAETAVTIDDVVYVIDSGRMKEKSYDPYSNVSTLHSS
WVSKASARQREGRAGRCQPGTCYHLYSKSRAASLPDYQVPEIKRIPIEELCLQVKLLDPQ
RQIADFLQKTLDPPVYETVRNGIIVLQDIGALTLDEKLTELGEKLGALPVHPSTSKMLLF
SILMNCLEPALTLACAADHREPFVLPMAPEEKKKAAAAKVELASLYGGYSDQLAVVAAFE
CWKRAKDRGQESHFCTRYFVSSNTMDMLFHMRKQLHTELVRVGFIPEDTSGCSLNAQDAG
IMRAVLTAGTYPMVGKLLPRCKQNKRAVVETASGAKVRLHPHSSNFSLSFNKSGGNPLII
YDEVTRGDGGMYIRNCSLVGPYPLLLLAMELAVAPATVNDEDSDEDLEASSDEEDKMENN
AYSGEQGGEIMSSPDNTVSVVVDRWLKFESTALDVAQIYCLRERLSAAMLFKVKNPQAVL
PPALGASMYAIACVLSYNGLSSVSSGDESLEPQATKLYPVDTNKPSSGRKGSAYIPPNGF
LRSLMSDNNRATTSHSHMGRGPIPNGPQPKRFQQQNPRNESPKTKAAAASSGNGGFGNGG
TPKNNSSKRRWPGKG
NT seq
3648 nt
NT seq
+upstream
nt +downstream
nt
atggggcgaaatgggccgaagaagtcaaaagggggcggcggccagcagcagggctctgtg
tcggaggccacccgtattcgaatcggcaagattctcgaggagtttcgtgcttctgatgcc
caagtccacacatttgagcctgggatgtcgaaacaagaacgtgctgctgttcaccaaatg
tgccgtaaaatgggaatgctatcaaaaagttctgggtatggggatcgacgctgcctttct
gcgtacaagaccaagaagaatcagaaagcaaataaagatgaagaaatggctacttgtctg
acattatctgaagaggcaaaatatgtgctacaagatctcttctcgtgtcaccctcctgat
gacggagaattgactgaaggtgcactggagaatcgtagtgaggcagctagtagagtacgg
aaactagattctagcttttgcaggcccaaaatgcgcaagggtgaaattgctaagaaggtg
gagctgctcgcaaaaagaatgaatggtgatccccacttaagaaagattgcggaaaaccga
agtaaacttcctattgcatccttcaaggatgtcatcacagcgaatttagaaactcatcag
gttgtgctaatagcaggggagactggttgcggcaaaactactcaggtcccccagtatatc
ttggatcatatctggggtaagggtgaaacttgcaaaattgtgtgcacacaaccaagacgt
atatctgctatttcagtggctgatcgaatctcttacgagagaggagaaaatgttggtgat
accgtcggatataagatacgtctggagtctaaaggaggaaaacaatcgtcaattatgttt
tgcacaaatggggtccttttgaggttgttaattagccgaggcacaaatgcaacgaatgga
gaaactgcaaccaagccgcttacggatggacttcagggaataacccatgttattgtggat
gaaattcatgaaagggacagattttctgatttcatgcttgcaattttcagggatttgctg
cctgtatgtcctcatgtgcgcctgattctcatgagtgctactattgatgctgagcggttc
tctcagtactttggtggctgccctattattcaggtcccaggatttacccatccggtcaaa
tctttttacttggaggatgtgctatctatattaagatcagcagatgataaccatgtgaat
cttgctgacttaagcagtatggaggacgtcacttcgttaacggaagattacagagctgct
ctcgatgaatcaattgacttggccttatcaagtgatgaatatgaccctttgctggaatta
ttatcctccaagcaaaccttgaaagtgtacaactaccagcattcattaactggtatatca
ccattgatggtgttttctggaaaaggtcgggtaggggaagtttgtatgcttctttctttc
ggtgccgactgctttttgactgccaaagatggaagctcggcattggattgggctcagaga
gaaaatcaacagcaggtttatgatataataaaaaagcatttagagaaagactcatcaaaa
ttagctgaagaggaggagttacttgaggaatacctatcaagtatcaatccggaacttatt
gacactgtactcatagaacgcatagttaagagaatatgtactgactctaaggaaggggct
attttagtgtttctttctggatgggacgatataaatcaaacaagagagaggttacttggt
tcacctttttttgcagatagctcaaagtttattatattttctctccattctatgattcca
tcttctgagcagaagaaggtcttcaaacgtccaccttctggtgttagaaaaattatcctt
tcgaccaacattgctgagactgctgttacaattgatgacgttgtgtatgttatagatagt
ggtaggatgaaggagaaaagttatgatccttatagcaatgtatctactcttcattcctct
tgggtttcaaaggctagtgcaagacagcgtgagggccgtgctggccgttgtcaaccagga
acttgttaccatctctattcaaaaagccgagcagcatctttgccagactaccaggttcct
gaaataaagaggatacctattgaggaactctgtttgcaggtgaagttgctcgacccccaa
cgtcaaatagcagactttctgcagaaaactttggatcctccagtttatgaaactgtacgg
aatggaatcattgttcttcaggacattggtgctttaactctagatgaaaaacttacagaa
cttggggagaaactgggtgcacttccagttcatccatcgaccagcaagatgcttctgttt
tcaatcttgatgaactgtcttgaacctgcattaactctagcatgtgcagctgatcacagg
gaaccatttgttctgcccatggccccagaagagaagaagaaagctgccgctgcaaaagtt
gaattagcttccttatatggcggctatagtgatcagctagcagttgttgcagctttcgag
tgttggaagcgagccaaagataggggccaagagtctcatttctgtactaggtactttgtt
tcatccaacactatggacatgctgtttcacatgcgtaagcagctccacactgaactggtt
agggttggatttattccagaggacacttccggttgtagcttgaatgctcaggatgcaggt
ataatgcgggcggtactcacagctggtacttatccaatggttggaaaactgctcccacgt
tgcaaacagaataaaagggctgtggtggagactgctagcggtgctaaagttcgcttgcac
cctcattcctcgaatttcagtttatctttcaataaatctggtggcaacccgcttatcatc
tatgatgaggtgactcgtggagatggagggatgtacatcagaaattgctcattggttggg
ccatatccattgttgttgctcgcaatggagttggcagttgcccctgccaccgtgaatgat
gaagacagtgatgaagatctggaagcttctagtgacgaggaagacaaaatggaaaataat
gcatactctggggagcagggaggggagattatgtcttctcctgacaacactgtttcagtt
gtagttgatcggtggcttaagttcgagtcaactgcccttgatgttgctcagatttactgc
ttacgagagcgtctctctgctgcaatgctatttaaagtgaaaaatccacaggcagttcta
ccccctgcacttggagcatctatgtacgctattgcctgcgtgctttcatataatggattg
tccagcgtatcatccggcgatgaatctctggaaccccaagcaacaaagctgtacccagtt
gacacaaacaaaccttcttcaggaagaaaagggtctgcatatatcccacctaatggtttc
ttaagatctttgatgtcagataacaaccgggcaaccacttcccattctcacatgggcaga
gggccaattcctaatggcccgcaacctaagagattccagcagcaaaaccctaggaatgaa
agtccaaaaaccaaagcagctgctgcttcgagcggcaatggtggttttggcaatggtggt
actcctaagaacaattcatctaaaagacgatggcctggcaagggctag
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