KEGG   Asparagus officinalis (garden asparagus): 109833351
Entry
109833351         CDS       T05243                                 
Name
(RefSeq) tyrosyl-DNA phosphodiesterase 1 isoform X1
  KO
K10862  tyrosyl-DNA phosphodiesterase 1 [EC:3.1.4.-]
Organism
aof  Asparagus officinalis (garden asparagus)
Pathway
aof03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:aof00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    109833351
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:aof03400]
    109833351
DNA repair and recombination proteins [BR:aof03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Other BER factors
     109833351
SSDB
Motif
Pfam: Tyr-DNA_phospho FHA_2 FHA
Other DBs
NCBI-GeneID: 109833351
NCBI-ProteinID: XP_020256587
LinkDB
Position
3:22038400..22053958
AA seq 672 aa
MADARVSIGFLLPLGSNLAVENSVPNIPIYEGINVIGRNNLAITDKRVSRKHISLCASVD
GSAEVTVEGPNPIVFKSGDQRKKICSQDKCPITHGDILELIPGNHLFKYVIEGRHHESSS
TSNLCLSNKGKRCIEDEPLAIKRNRQFHEDEAIARTLQNEQAISKIHDNTSAITRYGGSQ
SDTAIDLASGSVESIRDFHIPKDRLDLTFQLMRVQGLPAWVNSSSVAIDDVIQGSVLVAI
LSNYMVDIDWLMSACPNLRKIPHVLVIHGENGATAEHLKRNKPANWILHKPPLPISYGTH
HSKAMILVYATGVRVVVHTANLIYVDWNNKTQGLWMQDFPWKDNNSSSKGSSFENDLVDY
LKTLKWPDFDITLPGIGNANINASFFKKFDYSSAAVRLIASVPGYHSGLNLKKWGHMKLQ
SVLKECIFDKEFCKSPLVYQFSSLGSLDEKWLAEFASSLSSGMTSDKSPLGVGIPLIIWP
TVEDVRCSLEGYRAGNAIPSPQKNVDKDFLKMYWARWKANHVGRCRAMPHIKTYTRYNGQ
NLAWFLLTSANLSKAAWGALQKNNSQLMIRSYELGILFLPATIQNHGSVFSCTESTDLKQ
GASKPSASNETIKTKYVTLCCTEKKSNQSSEVIQLPVPYQLPPQPYTSQDVPWSWDKRYT
KKDVYGNTWPQV
NT seq 2019 nt   +upstreamnt  +downstreamnt
atggccgacgctcgggtgagtattggtttcttgcttccccttgggagcaatcttgccgta
gaaaattctgttccaaacattccaatttatgaagggatcaatgttattggacgtaataac
ctcgccataactgacaagcgagtgagtcggaagcatatcagtttgtgtgcatcagttgat
gggtctgctgaagtcacggtggaaggtccaaatccaatagttttcaaatcaggggatcaa
agaaagaagatttgttctcaagacaagtgcccaattacccatggggatattcttgagttg
attccagggaatcatttatttaagtatgtcatagagggcagacaccatgaatcttcatcc
acatccaatttatgcctctcaaataaaggaaagagatgcattgaagatgagcctttagct
atcaagagaaaccgccagttccacgaagacgaagctattgcaagaacactccagaatgag
caagctattagcaagatacatgataacacatcagcgatcaccagatatggtggctctcag
tcagatactgctattgatttagcctctgggagtgtggagtccatccgtgactttcacatt
cctaaggataggttggatcttaccttccagctcatgcgagtccagggccttccggcatgg
gtaaattcatcttcagttgctatcgatgatgtcatacagggaagcgtgcttgttgctatt
ctttcaaattatatggtcgacattgactggttgatgtctgcatgcccgaacttgaggaag
attcctcatgtgcttgttattcatggggaaaatggtgctaccgcggagcatttaaagagg
aacaagcctgccaattggattttgcacaagcctccacttcctatatcatatggaacacat
cactctaaagcaatgattctggtgtatgcaacaggggtgcgtgttgttgtacatacagcg
aatttgatttatgttgactggaacaataagactcaaggtttatggatgcaagattttccc
tggaaagataataacagctcgagcaaggggagttcatttgaaaatgacctagttgattat
cttaaaacactcaagtggcctgattttgatattacccttcctgggattggcaatgccaac
atcaatgcatccttctttaagaagtttgattatagcagtgcagcggtcagattgattgca
tctgttccagggtaccatagtggtcttaatcttaaaaagtggggtcatatgaaactacaa
agtgttcttaaagagtgcatttttgacaaagaattttgtaaatctccgcttgtttaccag
ttctcatctcttggttctttagatgagaaatggttggctgagtttgcatcgtcactgtcg
tcaggtatgacaagtgataagtcgcctttgggtgtagggataccccttataatctggcct
actgtggaagatgtcagatgctctttagagggctatagagctggtaacgctattcccagt
ccacaaaagaatgtggacaaggattttttaaagatgtattgggcaagatggaaggcaaac
catgtaggacggtgtcgtgcaatgcctcatataaaaacttacactcgatataatggccaa
aatcttgcatggtttctgctcacttcagcaaatttaagcaaagctgcatggggtgcactt
caaaaaaataactcacagttaatgattcgctcctacgagttggggattttgttcttgccg
gctactatccagaaccatggatctgtgttttcatgcacagagagtactgatttgaaacag
ggtgcgtctaaaccatctgcgagcaatgaaaccattaaaacaaaatacgtcactctttgt
tgtacggaaaagaagagtaaccaatcatctgaagtgattcaattgcctgtgccatatcag
ctgcctcctcaaccatatacttcccaagatgttccttggtcatgggataagcgttatacc
aagaaagatgtatatgggaacacttggccacaggtttag

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