Asparagus officinalis (garden asparagus): 109833710
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Entry
109833710 CDS
T05243
Name
(RefSeq) pinin-like isoform X1
KO
K13114
pinin
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03013
Nucleocytoplasmic transport
aof03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
109833710
03015 mRNA surveillance pathway
109833710
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aof03019
]
109833710
03041 Spliceosome [BR:
aof03041
]
109833710
Messenger RNA biogenesis [BR:
aof03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
109833710
Spliceosome [BR:
aof03041
]
Complex C
Other components
EJC/TREX
109833710
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pinin_SDK_memA
MIIP
Motif
Other DBs
NCBI-GeneID:
109833710
NCBI-ProteinID:
XP_020257081
LinkDB
All DBs
Position
3:33615553..33625732
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AA seq
414 aa
AA seq
DB search
MASGSVEKTAEELRKEIDELNRQRWEITKRLRDPRGLRRPAPSVGPTGPRKRGAVVGPAV
EDQPAPKRRLSSAVVKLEDGEIKEDASGPKDSKEEHISEVAAVPTGENGKPRPNPQINSG
SRRDGNPWMRKMDYDVIPTEPIPRILPKNEDPRLVKRNRRMLGQLLGTLEKFQEEDKQRS
TTEAYMRRSDSLRRAEEKAREESERLRQQEREQIAEKRRRDLTLQARVAAKAEQKKMELL
FILWSEHHKNLTNFLRTKTEPPIYYMPAKPLVEDAAIVEQSTEQVFLEWKTARRAELSEY
QKQIEEDYISNVDKELDRWQDARNTRRSNIQVNLQETMDKELETHRLEHGPKPRRITGNN
EEEDVEDIAAEDELMDEVLGAPERVYGDASKLPEAGNGSSNPVEMQLEGCNRAI
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
atggcgagcgggtcggtggagaagacagcggaggagctccgaaaagagatcgacgagctc
aatcgacaacgatgggagatcaccaagcgtctgcgagatcctcgcggcctccgccgcccc
gccccctccgtgggccccactgggcctcggaagcgcggcgctgttgttggacccgcggtg
gaggaccagccggcgccaaaacggcgtttgtcttccgctgttgttaaattggaggatgga
gaaattaaagaagatgctagtggaccaaaagattctaaggaagaacatatatcggaggtt
gcggctgttccaactggagagaatggtaaacctaggccaaaccctcaaatcaatagtggg
tcaagaagggatgggaatccatggatgaggaagatggactatgatgttataccgacagag
ccaattcctaggattttgccaaagaatgaggacccgagattggttaagcgcaacagaaga
atgctcggacagctcctggggacattagagaaattccaagaagaagacaagcaacggtca
acaactgaagcttatatgcgtaggtcagattcattacgacgggctgaagaaaaagctcgt
gaagaaagtgagaggctaaggcaacaggagagggaacaaattgctgagaagcgcaggcgt
gatttgacactacaagctcgtgttgctgctaaggcagagcaaaagaagatggagctgctg
tttattctttggtctgagcatcataaaaatctgaccaatttcttaaggacaaaaacagaa
cctccaatatattacatgccagctaagccattagttgaggatgcagctattgtggagcag
agtacagagcaggtatttctggaatggaagactgcaagaagagcagaactatccgaatac
cagaaacaaattgaggaggactatatctcaaacgtcgataaagagcttgatcgatggcag
gatgcaaggaacacacggagatcaaacattcaggttaacctgcaagagacaatggataag
gagctggagacccacaggcttgagcatggtcccaagcctcggagaatcacaggaaataat
gaagaagaggatgtggaagatattgctgctgaagatgaactcatggacgaggtccttgga
gcccctgagagggtttatggcgatgcttctaaattgcctgaggctggcaatggcagttcg
aaccctgtggagatgcagttggaaggatgtaatagggctatttag
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