Asparagus officinalis (garden asparagus): 109833791
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Entry
109833791 CDS
T05243
Name
(RefSeq) LOW QUALITY PROTEIN: THO complex subunit 2
KO
K12879
THO complex subunit 2
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03013
Nucleocytoplasmic transport
aof03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109833791
09122 Translation
03013 Nucleocytoplasmic transport
109833791
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aof03019
]
109833791
03041 Spliceosome [BR:
aof03041
]
109833791
Messenger RNA biogenesis [BR:
aof03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
109833791
Spliceosome [BR:
aof03041
]
Complex C
Other components
EJC/TREX
109833791
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
109833791
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
DUF5977
Motif
Other DBs
NCBI-GeneID:
109833791
NCBI-ProteinID:
XP_020257196
LinkDB
All DBs
Position
3:complement(36250943..36303076)
Genome browser
AA seq
1781 aa
AA seq
DB search
MSLQTPEFKYITDECLREWKGSNAGFKLPDPVPMNRFLYELCWSMVRGDLPFQKCRAALD
SVVFVEEESKEEMGSIFADIIAHMGQDLTLPGDHRGRLVKMAKWLADSLLVPSRLLQERC
EEEFLWESDMAKIKAQELKAKEVRVNTRLLYQQTKFNLLREESEGYAKLVTLLCQGGLDF
MTESSSTATISTIKSLIGHFDLDPNRVFDIVLECFELYPDNNIFYNLIPIFPKSHAAQIL
GFKFQYYQRVEVDTPVPPGLYRLAALLVKAEFIDLDALYAHLLPKDDEAFEHYDAFLAKR
IEEANKIGKINLAATGKDLMEDEKQDVTIDLLTALNIESEAVIERAPELENNQSLGLLIG
FLSINDWYHARILFDRLSHLNPVEHIQICEVLFSVIEKTISSAYSTVCPKHLQAIGNSSV
PSATVMESTAKSSVHAIIDLPSELFQMLSVAGPYLHRDTVLLQKVCRVLRAYYLSAQECL
GKSSEMTLRDPRLRMKDARLRVEEALGTCLLPSLQLIPANPAVGQEIWEVLSLLPYEVRY
RLYGEWEKDDERIPMVLAARQTAKLDTRRILKRLAKENLKQLGRMVAKLAHANPMTVLRT
IVHQIEAYKDMITPVVDAFKYLTQLEYDVLEYVVIERLAQGGREKLKDDGLNLSDWLQSL
ASFWGHLCKKYPSMELRGLFQYLVNQLKKGVGIELVLLQELIQQMANVQYTENMTEDQLD
AMAGSETLRCQASLFGMTKNNKALSRSTNRLRDSLLPKEEPKLAIPLLLLIAQHRSMVVI
NADVPHIKMVSEQFDRCHGTLLQYVDFLGSSVSPSTAYAQLIPSLEDLVHKYHLDPEVAF
LIYRPVMRLFKCVDRPDIFWPLDTFEQPNTASLENDDDFSSPTSDVVLNLGSSQKVIKWS
DLLDIVRSMLPPKAWNSLSPDLYATFWGLTLYDLYVPRGRYESEISKQHAAIKALEEITD
NSNMAITKRKKDKERIQDLLDKLTSELQKHEQHVASVSQRLSREKDKWLSSCPDTLKINM
EFLQRCIFPRCIFSMADAVYSAMFVHTLHSLGTPFFNTVNHIDVLICKTLHPMICCCTEY
EASRLGRFLYETLKMAYHWKSDESIYEHECGNMPGFAVYYRFPNSQRVTFSQFIRVHWKW
SGRITRLLVQCLESTEYMDIRNALIMLTKISSVFPVTRKSGINIEKRVAKIKADEREDLK
VLATGVAAALAARKSSWVSEEEFGMGYLDLKPATTSSSKLPGNMGNTSNGSALTATQSGE
TTGGKIVSAGNQIAEFSSSSKDQISRAKSSGADRSEGLATHKTRGGSTANGIDLASSNLP
PGIPKPSGNIKNTDEAAKLSSEDSIAKNASKIAVEPEVKSQPKRSAQSSLGKQSKQEPAK
DDTKSGKSISRTSGHPSTTADKDSSHPSEGKVSTPSARMTIDAHGAVTKMDSGDDPFTKQ
QKRTAPAEEQDKVNKRRKGDGEGKDGDGFDTRSXQLSLMLXXXXRTADKHLDKSKEKVIE
RYDKDRREKLDHPDRNRVEDIREKSRDRSLERHGRERSVERIMDRGADRTLDRSGDKARD
DRNSKSRHSEGLDEHLHGQNLPPPPPLPPSFVPQSVSSNRRDEEVDKRVSSRHIQRLSPR
HDEKERRRSEESVLASQDDGRKRREEDLRERKRDEREGGSTKVDERERDKGSIWKEDIDA
SAVSKRRKLKREHASPSEPGEDYSPVMQQSXPFSLRGDRKGIIGQHRAGYMDEQGSRIHG
KETSKINRREIDPVHEREWEEEKRLRADAKRKHRKESSMRS
NT seq
5346 nt
NT seq
+upstream
nt +downstream
nt
atgtctctccagacccccgaattcaagtacatcaccgacgaatgcttgcgagaatggaag
ggatccaacgctggtttcaagttacccgatcctgtccccatgaatcgattcctctacgag
ctctgctggtccatggttcgtggggatttgccttttcaaaagtgcagggctgcgctggat
tcggtggtgttcgtggaggaggagagcaaggaggagatgggttccatctttgcggatata
atcgctcatatgggccaagatcttacattacctggggatcatcgtggccgccttgttaaa
atggcaaaatggctggctgattctttattggttccatcaaggcttctgcaggagcgctgt
gaggaagaatttctttgggagtctgacatggctaagataaaagctcaagagttgaaagct
aaagaggtcagagtgaacacccgtctactttatcaacaaacaaagttcaatcttcttcgg
gaagaaagtgagggctacgccaagctggtcacacttctctgtcaaggcggtttagatttc
atgacagagagttcttcaacagcgacaatcagcactattaagtcattaattgggcatttt
gatctggaccctaaccgtgtttttgacatcgttttggaatgtttcgaactttatcctgac
aacaatatattttataaccttatacctattttccccaagtcacatgctgctcaaattttg
gggtttaagttccaatactatcagcgcgtggaagtagacaccccggttcctccggggcta
tacaggcttgcagctttactggttaaagcagagttcatcgatcttgatgctttgtatgca
catttacttcccaaagatgatgaagcatttgaacattatgatgcatttcttgcaaaaagg
attgaggaggcgaacaaaatcggaaaaattaatcttgctgctactggtaaagatctgatg
gaggacgagaaacaagatgttacaattgatctgctaactgctttgaatatagaaagtgag
gcagttatagaacgtgcccctgagctagaaaataaccagagtttgggtttgctaattggt
tttctttccatcaatgactggtatcatgcccggatactctttgatcgcctttcccatctc
aatccggttgaacatattcaaatttgcgaggtcttatttagtgttattgagaagactatt
tcctctgcttattctactgtttgtccaaaacatcttcaagctattggaaactcttctgtt
ccaagtgccacagtcatggaatcaacagcaaaatcatcggttcatgctattattgacctt
ccaagtgagctttttcagatgctatctgttgcgggtccatatcttcaccgtgatactgta
ttgttgcagaaggtgtgcagggtgttaagagcatactacctctctgcgcaagagtgtctt
ggtaaatcaagtgagatgacactgcgagatcctcgcttacgaatgaaggacgctaggctt
agggttgaggaagcactaggaacatgcttgcttccatcgttgcaattaatacctgcaaat
cctgcagttggacaggaaatctgggaagtcctttctttgcttccttatgaggtacgctac
cgtctgtatggtgagtgggagaaggacgatgaacgtattcctatggttttagctgctaga
cagactgcaaagttagacactagaagaatcctgaagagacttgctaaggagaatttgaag
cagctaggaagaatggttgccaagcttgctcatgctaatccaatgactgtacttcggaca
attgttcaccagattgaagcatacaaagacatgataacaccggttgtggatgctttcaaa
tacttgactcagttggaatatgatgtattagaatatgtggtgattgaacgcttagcccaa
ggtggacgtgaaaagctgaaagatgatggcctcaatttgtcagactggctccagtctctt
gcatccttttggggtcatctatgcaagaaatacccatcaatggaactacgaggcctcttc
cagtatcttgttaatcaattgaaaaagggagtgggtattgagcttgttctgttacaggag
ctcattcagcaaatggcaaatgtccagtacaccgagaatatgaccgaggatcaacttgac
gcgatggcgggaagtgagacattgcgttgtcaggctagtctttttggaatgactaagaac
aataaggcattgagtaggtctactaacaggctaagggactccttgcttccgaaggaagaa
ccaaagttggcgattcctctcttactgctaatagcccagcatcgttccatggttgttata
aatgccgatgtgccccacattaaaatggtcagcgagcaatttgacaggtgccatggaaca
cttttgcagtatgtagattttcttggtagttctgtttccccatctacagcatatgcccaa
ctgataccttcccttgaggatcttgtgcacaagtaccaccttgatccagaggtggctttt
ttgatctatcggcctgtgatgaggcttttcaaatgtgtggatcggcctgatattttctgg
cctcttgacacctttgaacagccaaacacagcaagcttagaaaacgatgatgatttctca
agtcccaccagcgatgttgtgctgaaccttggttcttcgcagaaggtgatcaagtggtca
gatcttcttgatatagttaggtcaatgctgccaccaaaagcttggaacagcctgtctcct
gatctatatgccaccttttggggacttacactgtatgatctgtacgtcccaagaggtcgg
tatgaatcagaaatttcaaaacaacatgctgctattaaagccctggaggagattactgac
aactcaaacatggcaataacaaagcgtaagaaggacaaggaaaggattcaagatttatta
gacaaacttactagtgaacttcagaagcatgaacaacatgttgcatctgtcagtcaaagg
cttagtcgtgaaaaggacaagtggctgagttcctgcccagacactttaaaaattaacatg
gagtttcttcagcgatgtatttttcctcgatgcatcttcagcatggcagatgctgtgtat
tctgcaatgtttgtgcatacgctgcattctcttggcacccctttcttcaacacagtcaat
cacattgatgttcttatttgtaaaaccctacatcccatgatttgttgctgcacagagtat
gaagcaagtaggctgggtagatttttatatgagactctaaagatggcatatcactggaag
agtgacgaatccatttacgagcacgagtgtgggaacatgccaggctttgctgtgtactat
agatttcccaatagtcagcgggtgacattttctcaatttattcgagtacattggaaatgg
agtggtagaattactcggttactggtacagtgcttggagtccactgagtatatggatatc
cgaaatgctcttatcatgttgacaaaaatatctagtgtttttccagttactcgaaaaagt
ggtatcaatattgaaaaaagggtcgctaaaattaaggcagatgaaagggaggatcttaag
gtcttggctactggagtagctgctgctttagctgctcgcaagagttcttgggtatctgaa
gaggaatttggtatgggctatcttgatttaaagcccgcaacaacctcctcatcaaagttg
cctggtaatatgggcaatacatcgaatggttcagctcttacagctacgcagagtggtgaa
actacaggaggtaaaattgttagtgcaggaaaccagattgcagagttttccagttcaagt
aaggaccagatatctcgtgcaaagtcctcaggagctgacaggtctgaaggtttggcaacc
cacaaaactaggggtggttcaacggcaaatggtattgaccttgcatcatcgaatttacct
cctggcattcctaaaccatctggtaacataaagaatacagatgaagctgcaaaactctca
tcagaagattcaatagccaaaaatgcttcaaagattgctgtggaacctgaggtaaaatct
caaccaaaacgatctgcgcagagttcccttgggaagcaatcaaaacaagaacctgcaaaa
gatgatactaaatctggaaaatcaatcagcagaaccagtggccacccttctactactgca
gataaagattcgtctcatccctctgagggaaaagtttctactccctctgcaagaatgact
attgacgcacatggtgcggtaacaaagatggactcaggggatgaccctttcactaaacag
caaaagagaactgctccagctgaagagcaagataaagtgaacaaacggaggaaaggagat
ggtgaaggaaaagatggtgatgggtttgacacacgatctnnacagttaagcctcatgctt
nnnnnnnnnnnnaggactgcagataagcatttggacaaatccaaagagaaagttattgaa
agatatgacaaagaccgccgggaaaaattggatcatcctgataggaaccgggttgaagac
atacgtgagaaatcaagagataggtcattggagagacatggaagggaacggtctgttgaa
agaataatggatagaggagcagacaggactcttgatagatctggtgataaagcaagggat
gatagaaatagtaaatctcggcatagcgagggacttgatgaacatcttcatgggcagaac
ttaccaccaccgccaccgttacctcccagttttgttcctcagtctgtcagcagtaaccga
agagatgaagaggtggacaaaagagtcagtagcagacatatacagaggttgtctcctaga
catgacgaaaaggagcggaggcgctcggaggaaagtgtgctagcttcacaggatgatgga
aggaagcgaagggaggaggatttgcgtgaaaggaagcgtgatgaacgagagggagggtcc
actaaggttgatgagagagagagagacaaaggcagcatttggaaagaagatattgacgct
tctgctgtttctaaacgaaggaaacttaagagggaacatgcatcaccatctgaacctggt
gaggactattctcctgtgatgcaacaatctnnccccttctccctgaggggagacagaaag
ggcatcatagggcagcatcgtgctggttatatggatgaacaaggatcaaggattcatggg
aaggaaacaagcaagatcaatcgtcgggagatagatccagtacatgaaagggagtgggaa
gaggagaagcgtctcagagctgatgcaaaaaggaagcaccggaaggaatcaagtatgaga
agctag
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integrated database retrieval system
