Asparagus officinalis (garden asparagus): 109834113
Help
Entry
109834113 CDS
T05243
Name
(RefSeq) nipped-B-like protein
KO
K06672
cohesin loading factor subunit SCC2
Organism
aof
Asparagus officinalis (garden asparagus)
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
aof03036
]
109834113
Chromosome and associated proteins [BR:
aof03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Adherin complex
109834113
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nipped-B_C
Cohesin_HEAT
PDS5
PHD_2
PHD
Cnd1
TPR_DNAAF5
COP9_hel_rpt
Motif
Other DBs
NCBI-GeneID:
109834113
NCBI-ProteinID:
XP_020257618
LinkDB
All DBs
Position
3:complement(51896831..51933998)
Genome browser
AA seq
1722 aa
AA seq
DB search
MEFHQGIGYEKACRLSNTVHSEIAPALSLPLLXXXXSDRAEVLDQASAIADLLQNCDVSY
LKLKEEVRDAGESSGECSRLYNEVLRYHPRAYECCGPGPLQERHLHNYVLEKKPFEQKVP
IIVQTQRECSETVLPHPDQNIIHDPTISSSRKPKLKKKENDVVPTGPDAPDQQVSIANFC
DAVEDFCGRAEMPDNLEGEDESSLPLNDIKLLINEIMSARTKKILQLIPVDTLVRLINVL
DHQIQCGQGLSINENEDLDLDAAPIVLCALESAHAALAVMTHQDMPKQIYKEETIERLLD
FARHQIMECMAAFNPLSRTHKPSENGNFDGEEEEDDDADIINSSMARKRRNIRSVNTKKP
AWNKVSSAVHSVVQKLCSVLGFLKDLLSVERLTDSCILQLVKTSFSTFLVDNIQLLHLKS
INLICGVFASYPQHRSFLIDETVQLLRKLQFSKRAIRAYHLPDEEHKQIQMVTALLIQLV
QFSVSVPEVMKSSLTWNSILDAAIDASYLTKSNEAAKDACCLFWTSVLQRFTNAKSLDVS
ECKIILENLMMDLLTTLNLPEYPASALILEVLSVLLLQNAGLKSKDTAARCMAIDLLGTI
AARLKRDAVVCSKDKFWILXXXXAKDACSVCLKGRGVNIVCNICQRCFHADCMGVAGHES
LLRDWLCHLCSCEKQLKVLQSYCKLQSKHNDKKVAHSSDSSDTSQLANRLEIVQQILLTY
LNETGPQDDSNLFTCWFYLCLWFKDDAQSNEKVIYYLARLKAKAILRDSGNNLLLSRSWA
KKICLALSQHSSFFRGFDTILSLLLASMKENSPILRAKALRAISLIVEADPEVLCDVRVQ
SAVEGRFCDSAISVREASLELVGRHIASYPDVGLKYFEKVAERIKDTGVSVRKRAIKIIR
DLCTSNSSFSQVTTAFIEIISRVTDEESSIQDLVCKTFYEFWFEEPSGSQTQFIGDGSSV
PMEVATKTEQIVDMLRRMPNHHLFVTIIKRNLTLDFLPQSAKATGINAVSLASVRKRCEL
ICRQLLERILQVEERNSDEEEVRALPYVLALHAFCLVDPMLCVPATDPSKFVVTLQPYLK
HQVNNKSIAQLLESIIFVIDAVLPLLRKPPPSVIEELQQDLKNMIMRHSFLTVVHACIRC
LCSLSKIAGKGAGLLENLIIFFFKKLDAPGYDNRQILVRSLFCLGLLLRYGNGLIDACYN
QHLHIMKCLPLLKKYLLMEDFGIKVRALQALGYLLIARPEFMLDKDIGKIIEASLSSNSD
SQLKMQVLQNIYEYLLDAEIQLGSDGTTKNATQYPEYVGNSVPVAAGAGDTNICGGIIQL
YWNGILDRCLDVSDQVRLSALKIVEIVLRQGLVHPITCVPCLIALEIDPLEVNSKLAHHL
LMNMNEKYPAFFECRLGDGLQLSFKFVQSIVHNKVSGNVKGKYDGNSIAYVKPGISRIYR
LIRGNRNSRNKFMHSIVRKFESGTSICSSVPFLVYCTEILSSLPFTCPDEPLYLIYDINR
VIQLRAGGLEANMKTWSSLSQQQGPMSISNPSQNGEKECGVHHNSESNLTTVENLDGSCG
ISEEILQKFQVDCHDAIALELLLKLKRHLKIVYGLNDSRCQAFSLKEHPKPGETISRQNI
PFSISDTPIRLPSSYQDMVQKYQEFKAILKDDTMDYATYTATIKRKRPTPRSSRAKKASH
TKVYDSEDNDDDDEDWTGGARKLDFSNQNPNGGRVTRQRLQV
NT seq
5169 nt
NT seq
+upstream
nt +downstream
nt
atggagttccatcaaggcatcggatacgagaaggcctgcaggctatccaacactgttcac
tccgagatcgctcccgcgctctctctccctctgctacnnnnnnnnnngagcgatcgagcg
gaagttctcgatcaggcgagcgcgatcgcggacttgcttcagaactgtgatgtcagctac
ctaaaattgaaggaagaggtgagggatgctggtgagagctctggagagtgttcgaggctc
tataatgaggttcttaggtaccatccgcgagcatatgagtgctgcggtccaggtcctctt
caggaacgtcatttacataattatgtattagaaaagaaaccatttgaacaaaaagtgcca
attatagttcaaacacaaagagagtgcagtgaaacagttcttcctcatccagatcagaat
ataattcatgatccaacaatttctagttcaaggaaaccgaaactaaagaagaaagaaaat
gatgttgtaccaacagggccagatgcccctgaccagcaagtcagtattgcaaacttctgt
gatgctgtggaagacttttgtgggagagcagaaatgcctgataatctggaaggagaagac
gaatcatcactgcctttgaatgatattaaattgcttataaacgaaataatgtctgcccgc
acaaagaagattttacagttaattcctgttgatacacttgtgcggcttataaatgttcta
gatcatcagatccagtgtggacaaggtttgtccattaatgagaatgaagatctcgattta
gatgctgcgccaattgttttatgtgcactggagtcagctcatgcagccctagcagttatg
acacaccaagatatgccaaagcagatttataaagaagaaactattgaacgacttcttgat
tttgcaagacatcagattatggaatgcatggctgcatttaatccactatccagaactcat
aaaccgagtgaaaatggtaactttgatggtgaagaagaagaagatgatgatgctgacatc
attaacagttccatggccagaaaaaggcgcaatatccggagtgttaacacaaagaagcct
gcttggaacaaggtttcttcggctgttcattctgtggttcagaaactctgctctgttcta
gggtttctgaaggatcttctctcagtggaacgcttaacagatagttgtatcctacaatta
gtgaaaacaagcttttcaactttcttggtggataatatacagcttttacatcttaagtca
atcaatttgatctgtggggtatttgcttcatacccacaacataggagttttctgattgat
gaaacagttcagcttctgcggaagttgcaattttcaaagcgtgccattagagcttatcat
ctgccagatgaggaacataagcagattcagatggtcacagccttgttaattcaactggtt
cagttcagtgtcagtgttcctgaagtcatgaagtcgtcattaacctggaattccatttta
gatgcagcgatcgatgcaagttatctgacaaagtctaatgaagctgctaaagatgcttgt
tgtcttttctggaccagcgttcttcagcgatttactaatgctaaatcccttgatgtttca
gaatgtaaaataattctagaaaaccttatgatggatcttctgacaacgttgaatttacca
gaatatcctgcttctgctcttattcttgaggtcctttctgtgttactgctccaaaatgca
gggttaaagtcaaaagacacagcagctcgctgcatggctattgacctgctgggaacaatt
gctgctagattgaaacgtgatgctgtagtttgcagtaaggacaagttttggattctgnnn
nnnnnnnatgctaaagatgcttgttccgtttgtcttaagggaaggggtgtgaacattgtc
tgcaatatttgtcagagatgcttccatgcagattgtatgggagtagctggacacgaaagt
ttgcttcgtgattggttgtgtcatctctgttcttgcgaaaaacagctgaaagttttacaa
tcatattgcaagttgcagagcaaacataatgataaaaaagttgcccattcaagtgacagt
tctgacacaagtcaattagctaaccgactggaaatcgttcaacagatacttctcacttac
cttaatgaaactggcccacaggatgattcaaatctgtttacttgctggttttatctctgt
ctgtggttcaaggatgatgctcaatcaaatgagaaggttatatactaccttgctagacta
aaagcaaaagcaattttgcgtgactctggaaataatttgttattgtcaagaagttgggca
aaaaagatatgcttagctctgagccaacatagttcatttttcaggggttttgatacaatt
ctctctcttcttctggcgagtatgaaagaaaactctcctatattgcgagcgaaggccttg
cgtgcgatcagtttaatagttgaagctgatccagaagtcttgtgtgatgttcgagtccaa
tctgctgttgaaggacggttttgtgactctgcaatttctgttcgtgaagcttctcttgaa
cttgttggcaggcatattgcctcctatcctgatgttggattgaagtattttgaaaaggtt
gctgaacgaataaaggacactggagttagtgttcgcaaacgcgcaatcaaaatcatccgg
gatctatgcacttcaaattcaagcttttcacaagtgacgactgctttcattgagatcatt
tctcgcgtgactgatgaagaatcaagcatacaagacctagtatgcaaaacattttatgag
ttctggtttgaagaaccttctgggagccagacacagtttattggtgatggtagttctgtg
cctatggaggttgcaacaaaaactgaacagattgtagatatgttgaggaggatgcctaat
catcatctttttgtcactataataaagaggaatttaacacttgattttcttcctcaatct
gctaaagctactgggattaatgctgtgtctctggcatcagtacgtaaacgatgtgaatta
atatgcagacagttacttgaaagaatattgcaggtagaggagagaaatagtgatgaagag
gaggttcgggcactcccatatgtgcttgcattacatgcattttgtcttgtggatccaatg
ctctgtgtaccagcaactgatccatccaaatttgtggtgactcttcagccataccttaag
caccaggtgaataacaagtcaattgcacaattgcttgaaagtataatatttgtaattgat
gctgttcttccattacttcggaagccgccaccaagtgttattgaggaacttcaacaggac
ttgaaaaacatgatcatgcggcattctttcttgactgttgttcatgcttgcatcaggtgc
ctttgttcgcttagcaagattgctggtaaaggagcaggcttacttgagaatctgataatt
tttttcttcaaaaaattggatgctcctggttatgataatagacagatattagtgcgttct
cttttctgtcttgggcttctccttaggtatggcaatggcttgattgatgcatgttacaat
cagcatctccatattatgaagtgcctcccgctgctcaaaaagtaccttcttatggaggac
ttcggcataaaggttcgagctttgcaggcattaggttatctattgattgccaggcccgaa
ttcatgttggacaaggatataggcaagataatagaggcttcactatcctccaattctgac
tctcaacttaagatgcaagtgctgcaaaacatatacgaatatctacttgatgcggaaatc
caactggggtccgatggtacgactaaaaatgcaactcaatatcctgaatatgttggaaat
agtgtgcctgtggctgctggtgctggtgacactaatatttgtgggggtatcattcagctg
tattggaatggtatcttggacagatgcttggatgtcagtgaccaagttcgtctctctgct
ctcaagattgttgagattgttcttcgtcaaggattggttcatccaataacatgtgttcca
tgcctcatagcattagagatcgatcctctggaggtcaattcaaaactggcccatcacttg
ctcatgaatatgaatgaaaagtatcctgccttttttgagtgccgtttaggtgatggcctc
caactgtcatttaaatttgttcaatccattgtgcacaataaggtatctggaaatgtgaaa
gggaagtatgatggcaatagcatcgcatatgtcaaaccaggaatttctcgcatatacaga
cttattcgaggaaatcgcaattcacgaaataaattcatgcactcaatagttcggaagttt
gagtctgggacctcaatttgctcatcggttccatttcttgtatattgtacggaaatcctt
tcttctctcccctttacatgtccagatgagcctctttacctgatttatgatatcaatcga
gtaatacaacttagggctgggggacttgaagcaaatatgaaaacatggagttctttgtca
cagcagcagggtcccatgagcatctcgaacccatcacagaatggggagaaagaatgtgga
gtacatcacaactcagagagcaatttgacaacagtagagaatttggatggctcttgtggc
atttcagaagaaatcctacaaaagtttcaggttgattgtcacgatgcaatagccttggaa
cttcttttgaagctgaaaaggcacttgaaaattgtatatggcttaaatgatagtcggtgt
caggcattttcattaaaggaacatccaaagcctggggagacaatatctaggcaaaacatt
ccattcagcatcagtgatactccaatcagattgccttcctcctatcaggatatggttcag
aagtaccaggagtttaaagccatactaaaggatgatactatggactatgcaacctacaca
gccaccatcaagagaaagcgccctacacccagaagctcaagagctaaaaaagcatctcat
acaaaagtttatgacagcgaagacaatgatgatgacgacgaggattggaccggtggggcc
cgaaagctggacttcagcaatcagaaccctaatggcggccgggtaacgagacaacggttg
caagtataa
DBGET
integrated database retrieval system
