Asparagus officinalis (garden asparagus): 109834956
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Entry
109834956 CDS
T05243
Name
(RefSeq) vam6/Vps39-like protein
KO
K20177
vacuolar protein sorting-associated protein 3
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
109834956
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
aof04131
]
109834956
Membrane trafficking [BR:
aof04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
109834956
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-Vps39_C
Clathrin
CNH
Vps39_1
Beta-prop_RSE1_1st
TPR_Vps41
Motif
Other DBs
NCBI-GeneID:
109834956
NCBI-ProteinID:
XP_020258553
LinkDB
All DBs
Position
3:36182156..36198210
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AA seq
975 aa
AA seq
DB search
AGLSPAVPLTIRSLSVFNPTDSSQTLIFIGTGGGKILLFSLNPSDSSVDFLKSSSITNRV
IDSILVLDEIGRILVLSDGFLFLIDLFLLQPAKKVGFLKGVTAFSKRIHCSDDVDADSSD
LFANDAAVKSPRKSFLKKLANGSGTRVSEAKREEGSSCFVAAAAGKGLVLMKLMSPISEV
QSDSEYGGISVVWKEIQGIEGVKTMTWLGDSMIVGTLDGYTLFSIASGKITPIFLLPEAS
GPPRLKCLHRSKEVLLLVDNVGVVANESGQPVGGSLIFQYIPESIVEMGCYVIVGREGQL
DLYSRKSAACMQSLLVAKGSGAPCILASNDRGNGEVVVIATTHMVICYRKVSAEEQIKVL
LRKKNFKEAISLVEEVDSEGEISREMLSFVHAQVGFLLLFDLHFEEAVNHFLLSEAMQPS
EIFPFIMRDPNRWSYLVPRNRYWGLHPPPVPLEQVVDDGLTAIQREIFLRKAGVDTTTDD
NFLLNPPSRAELLQSAIQNMIRYLRTSREKDLTPPVKEGVDTLLMYLYRALNCVEDMEQL
ASSQNSCVVEELETLLDDSGHLRTLAFLYASKGMVSKALSIWRILARNYSTGLWIEPTSS
VEFDSADMSADVISGEKSAAMEASNLLKESSDQDLVLEHLRWIADIDQELAVMVLTSEKR
VYQLSPEEVLAAIDPKKAEIQQRYLQWLIQDQDCDDTRFHTIYALSLAKSAIEIVDIECG
NDICNGRSFSEMNISDVEAVGTYQYLVRERLQLFLQASDLYDPQEVLHVIEGSELWLEKA
ILYRKMGQETLVLQILALKLEDSEAAEQYCAEIGRSDAYMQLLDMYLDPQDGKEPMFKAA
VRLLHNHGESLDPLQVLEKLSPEMPLQLASDTILRMLRARVHHHRQGQIVHNLSRAIDLD
ARSARLEERSRHVQINDESTCDSCHARLGTKLFAMYPDDSVVCYKCYRRLGESTSPHGRN
FKQKPVFKPGWLVIR
NT seq
2928 nt
NT seq
+upstream
nt +downstream
nt
gccggcctctcccccgccgtccccctcaccatccgatccctctccgtcttcaaccccacc
gactcctcccaaaccctaatcttcatcggcaccggcggcggcaagatcctcctcttctcc
ctaaaccctagcgactcctccgtcgacttcctcaaatcctcctctataaccaaccgcgtc
atcgactccattctcgtcctcgacgagatcggaaggatcctcgtcctctccgatgggttc
ctcttcttgatcgatctcttcctgttgcagcctgcgaagaaagttgggttcttgaagggg
gtgactgcgttttcgaagagaattcattgctcagatgatgttgatgcagatagttcagat
ctctttgcgaacgacgctgcggtgaaatcgcctagaaagagttttcttaagaaattggct
aatggaagtgggactagggtatcggaagcgaagagagaagagggctcgagttgctttgtg
gcggccgcagcaggaaaaggtttagtgctgatgaagctcatgtcgccgatttcagaagtt
cagtcggattctgagtacggcggaatttctgtagtttggaaggagattcaggggattgag
ggtgtaaagactatgacttggcttggggattcaatgattgttggcactttggatggttac
acactcttttcgattgctagtgggaagatcacaccgatatttttgcttccagaagcttct
ggacctccgagattgaaatgcctgcataggagtaaggaagtgttgttgttagttgataat
gtgggtgttgtcgcgaatgagtctggtcagccagtgggtgggagcttgatttttcagtat
attcctgaatctattgtggagatggggtgttatgtgatagttggaagggaagggcagttg
gatttgtattcaagaaagagtgcagcttgcatgcagtccttattggtggcgaaggggagt
ggtgctccgtgcattttggcgagcaacgatcggggaaatggagaagttgttgtgattgca
acgactcatatggttatttgctatcggaaagtgtccgctgaagaacagattaaagttttg
ttaaggaaaaagaattttaaagaagctattagtttggtggaagaagttgactctgagggt
gaaatatccagagaaatgctctcgtttgtgcatgcacaagtggggttcctattacttttt
gatttacattttgaagaagcagtgaaccatttcttgctttcagaagctatgcagccatct
gaaatctttccatttataatgagggatccaaatcgctggtcttatctggtgccaagaaac
cgatattggggattgcaccctcctcctgtgcctcttgagcaagttgtcgatgatgggctt
acggcaattcagcgagaaattttcctcagaaaagctggtgtagatactactacagatgat
aactttcttttgaatccgcctagtagagctgaattattgcagtccgcaattcaaaacatg
atcaggtatctacgcacttctcgggagaaggatttgacccctccagtgaaggagggagtt
gatactcttttaatgtatctttatagagccctcaattgtgtagaagatatggagcagctt
gcatcatcccagaacagctgtgttgtggaggagttagaaaccctgttagatgactctggg
catttacgaacacttgctttcttatatgccagtaaaggaatggtctcaaaggctctttcc
atttggcgtatcttggcaagaaattattcaactggactgtggatagagcctacatcttca
gtggaatttgattctgcagatatgtctgcagatgtaatatctggtgaaaagtctgctgct
atggaagcatcaaatctacttaaagagtcctctgatcaggatttggttcttgaacacctc
agatggattgcagatattgaccaagaacttgcagtcatggttttaacgtcagagaaaagg
gtctatcagctttcacctgaagaagtacttgctgcaattgacccgaaaaaagctgagatt
cagcagagatatttgcaatggttgattcaggaccaagactgtgatgatactcgatttcac
actatatatgctctctctcttgccaaatctgcaatagaaattgttgacattgagtgtggt
aatgatatttgtaacggtaggagcttcagtgagatgaatatatctgatgttgaagcagta
ggtacctaccaatatctggttagggagagattgcagttatttctacaggcttctgacttg
tatgatccgcaagaagtgcttcatgtgatagaaggctccgagctatggctggaaaaggct
atcctataccgaaagatggggcaagaaacgttggtactgcagatcttagcattgaagctg
gaggacagtgaggctgcagaacagtactgtgcagaaattggtagaagtgatgcctatatg
cagttgctggatatgtatttggatccacaagatggcaaggaacccatgtttaaggccgct
gtacgtcttcttcataatcatggagaatcactggatcctttgcaagttttagagaaattg
tctccggagatgcctctccagcttgcctcagatacaatcttgagaatgttgagagctcga
gttcatcatcatcgccagggacagattgttcacaacctctcgcgggccattgatttggac
gcacgatctgcaaggttggaggagaggtcgaggcacgttcagataaatgatgagagcacg
tgtgattcttgtcatgcccgccttggcaccaagctctttgcaatgtatccagacgattcg
gtcgtctgttacaagtgttaccgccgtctaggtgaatcaacttctccacatggacgtaac
ttcaaacagaaacccgtatttaaaccaggatggcttgttatcagatag
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