Asparagus officinalis (garden asparagus): 109835474
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Entry
109835474 CDS
T05243
Name
(RefSeq) LOW QUALITY PROTEIN: WD-40 repeat-containing protein MSI4-like
KO
K10752
histone-binding protein RBBP4
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03082
ATP-dependent chromatin remodeling
aof03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
109835474
03083 Polycomb repressive complex
109835474
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
aof03036
]
109835474
Chromosome and associated proteins [BR:
aof03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
109835474
Histone modification proteins
HAT complexes
HATB complex
109835474
HDAC complexes
Sin3A-HDAC complex
109835474
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
109835474
PRC2.2
109835474
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
109835474
Heterochromatin formation proteins
Other heterochromatin formation proteins
109835474
Chromatin remodeling factors
NuRD complex
109835474
NuRF complex
109835474
NuRF complex (fruit fly)
109835474
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
Beta-prop_EIPR1
CAF1C_H4-bd
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WD40_WDHD1_1st
Beta-prop_RIG_2nd
Beta-prop_EML
EIF3I
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_DCAF12
WD40_RFWD3
Beta-prop_IFT122_1st
Beta-prop_WDR35_TULP_N
Beta-prop_SPT8
ANAPC4_WD40
Motif
Other DBs
NCBI-GeneID:
109835474
NCBI-ProteinID:
XP_020259041
LinkDB
All DBs
Position
3:103276295..103297360
Genome browser
AA seq
457 aa
AA seq
DB search
MKDRAKTGETSVDERYTQWKSLVPVXNLVWPSLSCRWGPQLEKATYKNRQRLYLSEQTDG
TVPNTLVIANVEVVKPRVAAAEHISQFNEEARSPFVKKYKTIIHPGEVNRIRELPMKSNI
IGTHTDSPDVLIWDVDAQPNRHAVLGAADSRPDLVLTGHQENAEFALAMCRSDPLVLSGG
KDKLVVLWSIQDHISSLSDASATKLSGSSGKQPTKIGEEKNSDSPKIEPRGVFQGHQETV
EDVQFSPSSAQEFCSVGDDSCLILWDARVGSGPAIKVEKAHNGDLHCVDWNRHDENLILT
GSADSSVRLFDRRKLISGAVGSPLHIFEGHTSPVLCVQWCPDKASVFGSAAEDSFLNVWD
HEKVGKKQDQVGTRTPKSPPGLFFQHAGHRDKVVDFHWNTEDPWTIVSVSDDCESTGGGG
TLQIWRMNDLIYRPESEVLEELNSFKDHILSCAPLRT
NT seq
1374 nt
NT seq
+upstream
nt +downstream
nt
atgaaagatagagcgaaaacaggggagacgagcgtcgacgagaggtacacacagtggaag
tctctggtgccggtgnctaacctcgtctggccttcactctcctgcaggtggggtccacaa
ctggagaaagccacatacaagaatcgtcaacgtctttacctttcagagcagactgatggc
actgttccaaacactcttgtcatagcaaatgttgaagtggttaaaccgagggttgcagct
gcagagcatatatcccagttcaatgaagaagcacgttctccctttgtgaaaaagtacaaa
actattatacatccaggagaggtcaacagaatcagggaacttccgatgaaaagcaatata
ataggaactcatacagacagtcctgatgtgctcatttgggatgtggatgcgcaaccaaat
cgtcatgctgttcttggagctgcggattctcgtcctgatttggtgttgacagggcatcaa
gaaaatgcagagtttgcacttgccatgtgtcgttcagatcctcttgttctatctggaggg
aaggacaaattagttgtcttatggagcatacaggatcatatttcctctttatcagacgcc
tcagctactaaattgtctggatccagtggcaagcagcccacaaaaatcggcgaggagaaa
aattcagatagtcctaaaattgagccacgaggcgtattccaagggcatcaagagactgtt
gaagatgtccagttctctccttccagtgcacaggaattctgtagtgtaggtgacgactct
tgcctcattctctgggatgctcgtgttggtagcggtcctgctatcaaggtagaaaaggct
cataatggtgatcttcattgtgttgattggaaccgccatgatgaaaatcttatactgact
ggatctgctgatagttctgttcgtttgtttgatcgtcgtaaactgatttctggtgctgtt
ggatcacctttgcatatatttgaaggtcacacatcaccggttctgtgtgtgcaatggtgt
cccgacaaagcatcagtttttggtagtgctgcagaggatagttttttaaatgtttgggac
catgagaaggttggcaagaagcaagatcaagtgggaacaaggacgccaaaatcacctcct
ggtttattctttcaacatgcaggacacagagataaagttgttgatttccactggaacact
gaagacccctggaccattgttagtgtatctgacgactgtgagagcactggtggtggtggg
actctgcagatatggcgcatgaacgacctaatctacaggccggagagtgaggttttagag
gagctgaactcgtttaaagatcacatactatcatgtgcacctcttaggacctga
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