Asparagus officinalis (garden asparagus): 109835491
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Entry
109835491 CDS
T05243
Name
(RefSeq) probable CCR4-associated factor 1 homolog 11
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109835491
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aof03019
]
109835491
Messenger RNA biogenesis [BR:
aof03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109835491
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
109835491
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
109835491
NCBI-ProteinID:
XP_020259054
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Position
3:complement(100465171..100466145)
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AA seq
324 aa
AA seq
DB search
MKEERDPGKKQPLVFDGVRDVYANNVHQELELMSALRKSFNFVIIDTEFPGFLRSTPRGA
SEEEIYSALKYNVDNMKLVQLGITLSNGKISLAWQFNLKDFDHEADNRSEDSIELLKRSG
IDFDKNRKYGISADVLSIGLTEKLIAGCEGLKWITFHGLYDLAYLIKLVYKMPLPETLAG
FLGLVRILFGPMVYDVKYMAKRCSAYFAEVGLVKLSKMLGINWRGKPHQAGHDSLLTAKV
FWEMMNKFDGFKEDEHAGILYGFEENARKELENPQMSYYPIVPDLMNLSPNYASYDYFYA
FPVAYNPLANGYWVVHEPYYYVRA
NT seq
975 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaagaaagagatcccggcaaaaaacaacccttggtttttgatggagttcgagat
gtatacgcgaacaatgtgcatcaagaactcgagctgatgtcggccctccgaaagtcgttc
aacttcgtcatcatcgacacagaattccctggtttcctacgatcaacccctcgcggtgca
tccgaagaagagatctacagcgctctcaagtacaacgtcgacaacatgaagcttgttcag
ttagggatcacgttgtccaatggaaagatctctctggcctggcaattcaacttgaaagat
ttcgatcacgaggcagacaatcgctcagaagactcgatcgagcttctgaaaaggagcggg
attgatttcgacaagaaccgcaaatatggcataagcgcggatgttctttcgatagggttg
acggagaaactgatagcaggctgtgaagggctgaagtggatcactttccatggtttatat
gacctggcttatctgataaagctcgtctataagatgcctctgccagagacactggcgggt
ttcttggggcttgttcgaatactgtttggtcccatggtttacgatgtgaaatatatggcg
aaaagatgcagtgcgtattttgctgaagttgggttggttaaactctcgaagatgctcggg
attaattggagggggaaaccgcatcaggctggccatgacagtctactgaccgcaaaagtt
ttctgggagatgatgaacaagtttgatggtttcaaagaagacgagcatgctgggatactg
tatgggttcgaggaaaatgcgagaaaagagttggagaatcctcagatgtcctactatcct
atagtccctgatctgatgaacctcagcccaaattatgcatcttatgattacttttatgct
tttcctgtagcttacaatcctctagccaatggctattgggtagttcatgagccttattat
tatgtgcgagcctaa
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