KEGG   Asparagus officinalis (garden asparagus): 109835541
Entry
109835541         CDS       T05243                                 
Name
(RefSeq) UBP1-associated protein 2C-like
  KO
K12741  heterogeneous nuclear ribonucleoprotein A1/A3
Organism
aof  Asparagus officinalis (garden asparagus)
Pathway
aof03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:aof00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    109835541
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:aof03019]
    109835541
   03041 Spliceosome [BR:aof03041]
    109835541
Messenger RNA biogenesis [BR:aof03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     109835541
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     109835541
Spliceosome [BR:aof03041]
 Common components
  Common spliceosomal components
   hnRNP proteins
    109835541
SSDB
Motif
Pfam: RRM_1 RRM_Nup35 RRM_7 Nup35_RRM_2 RRM_3
Other DBs
NCBI-GeneID: 109835541
NCBI-ProteinID: XP_020259128
LinkDB
Position
1:126376720..126387480
AA seq 332 aa
MDDSKKRKLEEEEGGNGELSLINSDQQLRLLLDPLRKDQLVDLLAKLGTQYATVADEIRG
VASSDPVHRKLFVRGLAWETTSETLCAAFCDHGEIEEGAVIVDKATGKSRGYGFITYKHM
ESAQRALREPSKLIDGRLAVCNLACEGLNSASVSSDIALRKIYIGGLSPDTSTEVLLNFF
SRHGEIEEGSVAYDKETNKSRGFGFVTYKTAEAAKKAIDDPNKILGGRNITVKLADTKNK
ATQGQLPPTLLPIPIPISAAYSQPGKNQVSTATAYAPYPQLLPSYPSAPYPGAPTQYPHQ
SHGSYSPLSAKKEHIGFPSVSPTGLSGYPYYR
NT seq 999 nt   +upstreamnt  +downstreamnt
atggacgattccaagaagagaaagcttgaagaagaagaaggaggcaacggggagctctct
ctcatcaattccgatcaacagctgcgccttcttctcgatcctcttcgaaaagatcagctc
gtcgacctcttagccaaactaggtacccagtatgctacagttgcagatgaaattagaggt
gtggcaagctccgatcctgttcatcgcaagcttttcgttcgtgggttggcatgggaaact
acttcagaaaccttgtgtgctgcattttgtgatcatggtgagatcgaagaaggagctgtc
atagttgacaaggcgactggaaagtctcgtggatatggcttcattacttacaagcatatg
gaatctgctcaaagggccttgagagaaccaagcaaattgattgatggtcgattggcagtc
tgtaatcttgcttgtgagggtctaaacagtgcatctgtaagttctgatatagcgcttagg
aagatatatattggtggactctctccagacacttcaaccgaagttttgctcaatttcttc
agcaggcatggggaaatagaagaaggttcagttgcttatgataaagagacaaacaaatca
agaggatttggctttgtcacgtacaaaactgctgaggctgcaaagaaggctatagatgat
ccaaataaaatacttggggggagaaacataactgtgaagcttgcagacaccaagaacaaa
gctacacaaggccagcttccaccaactctgcttccaatacccattcccatttcagctgca
tattcacagcctggaaagaaccaggtttcaactgcaacagcctatgctccttatccgcag
cttttgccatcatatccttctgctccatatccaggtgcaccaactcagtaccctcatcaa
tcgcacggctcatattcaccgctctcagcaaagaaggaacacatcggttttccttcagtt
tcacctactggactttctggatacccgtattatcgctag

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