Asparagus officinalis (garden asparagus): 109836400
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Entry
109836400 CDS
T05243
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109836400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aof03019
]
109836400
03012 Translation factors [BR:
aof03012
]
109836400
Enzymes [BR:
aof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109836400
Messenger RNA biogenesis [BR:
aof03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
109836400
Translation factors [BR:
aof03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
109836400
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
nSTAND3
NACHT
AAA_19
T2SSE
CENP_C_N
Motif
Other DBs
NCBI-GeneID:
109836400
NCBI-ProteinID:
XP_020259877
LinkDB
All DBs
Position
4:complement(3894508..3913612)
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AA seq
896 aa
AA seq
DB search
MARQHGLHFHAYNKGKSLVFSKVPLPDYRADLDERHGSAQKEINMSTETERRVENLLAKS
IGTSGIIGSSSTSSPTSSQGSKQSLPNMVTTDGESRARLGVPKEKFSLELRDMQISKKST
PSARAMQSFREKLPAYKVKEEFLKAVADNQVLVVSGETGCGKTTQLPQFILEEEVSHLRG
ADCNIICTQPRRISAISVAARIASERGENLGETVGYQIRLEAKRSAQTRLLFCTTGVLLR
RLVQEPDLGGVSHLLVDEIHERGMNEDFLIIILRDLLPRRPDLRLILMSATINADLFSKY
FENAPTIHIPGLTFPVAEMFLEDVLEKTHYKIVSETDNFVGGSRRRRQLSSKSDPLTEMF
EDVDINNQFKSYSISTRQSLEAWSGAQLDLGLVEATIEYICRNEGDGAILVFLTGWDEIS
KLLEKIKANTLLGNSSRFLVLPLHGSMPTVNQREIFDRPPSNMRKIVLATNIAESSITID
DVVYVIDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRVQPGVCYRLYPKLVHE
AMLQYQLPEILRTPLQELCLNIKSLQLGAVATFLAKALQPPDHLAVQNAIELLKTIGALD
EIEELTPLGHHLCMLPLDPNIGKMLLMGSIFQCLDPALTIASALAHRDPFVLPINRKEEA
DSAKRSFAGDSCSDHIALLKAFDTWKDAKRSGRARDFCWQNFLSPMTLQMMDDMRGQFLD
LLSDIGFVDKAKGIKAYNHYGHDMEMISAILCAGLYPNVILCKKRGKRTAFYSKDVGKVD
IHPASVNAGVHLFPLPYLVYSEKVKTTSIYIRDSTNISEYALLLFGGTLKPSKTGEDITM
LGGYLHFSAPKSVIQLIQRLRGELDRLLQRKIEEPRLDVYSEGKGVVTAAVELLHS
NT seq
2691 nt
NT seq
+upstream
nt +downstream
nt
atggctcgccagcacggccttcatttccatgcttacaacaaaggaaaatctcttgttttt
agcaaagttccattgccagattatcgtgcagatcttgatgaacgacatggatcagcacag
aaagagattaatatgtcaacagagaccgagagaagagttgagaatcttctggcaaaatcc
ataggaacatcaggaattattggttccagtagcacttccagccctacctccagtcaagga
agtaaacagtctttgcctaacatggttacaacagatggtgaatcaagagcacgattgggt
gttccgaaggaaaagttcagtcttgagcttagagacatgcagatctccaagaagtccact
ccaagcgcaagagcaatgcagtcgtttagggaaaagttaccagcatataaggttaaagag
gagtttctaaaagctgtggcagacaatcaggtattggtcgtttctggagagacagggtgt
ggaaaaactacacagctaccccaatttatactcgaggaggaagtatcacatctccgtgga
gcagattgtaatataatatgcactcaaccgcgtcgtatatctgctatatctgtggcagca
agaattgcttcagaaaggggtgagaatcttggggagactgttggctaccaaatccgttta
gaagctaagcgttcagctcagacaaggcttcttttctgtacaactggggtgttacttcgg
agactggttcaggaacctgatctgggtggtgtcagtcacttattggtggatgaaattcat
gaaagaggcatgaatgaggattttctcatcataattttgcgtgaccttcttccccggcga
ccagaccttcgcctaattctaatgagtgccaccataaatgctgacctattctctaagtac
tttgaaaatgcaccgactatccatattccggggttgacatttcctgttgctgagatgttt
ctcgaggatgttttggagaaaactcattacaagatcgtatcagagactgacaattttgta
ggcggctcaagaagaagaagacagctatcttcgaaaagtgacccattgactgaaatgttc
gaggatgttgatatcaacaatcaattcaaaagctacagcatatctacacggcagtctctt
gaggcctggtctggtgcacagttagatttgggtcttgtggaagcaacaatcgagtatatt
tgtcggaatgaaggggatggagcaattcttgtcttccttaccggttgggatgaaatatcc
aagttgcttgaaaagattaaagcaaacactcttcttggaaattctagcaggtttcttgtt
cttccgttgcacggttcaatgcccactgtgaatcaacgtgaaatatttgatagacctcca
agtaatatgaggaagattgtcttagcaaccaatattgctgaaagcagtattaccatagat
gatgttgtgtatgtcatagactgcggaaaggcaaaggagacaagttatgatgctttgaat
aagttggcatgtctattgccatcatggatatcaaaggcttcggcacaccagagacgaggg
cgtgctggccgtgttcagccaggagtgtgttacaggctgtatccgaaacttgttcatgaa
gcaatgctccaatatcagttacctgaaattctcagaacccccttgcaagaactttgccta
aatatcaagagcctacagttgggtgctgttgccacatttctagcgaaggcactacagcct
cctgatcatcttgctgttcagaatgcaattgaacttctcaaaacaataggggctttagat
gaaatagaagaactcactcctcttggtcatcacctttgtatgctgcctttggatcccaat
attggaaagatgctactcatgggatccatattccagtgcctggatccagctctgacaata
gcttctgctcttgcacaccgcgacccatttgttctaccaataaacaggaaagaggaagct
gacagtgcaaaaagatcatttgctggtgattcttgcagtgatcatattgctcttctgaaa
gcttttgatacatggaaagatgcaaagcgtagtggaagagctcgtgatttttgttggcaa
aactttttatcacctatgacactgcagatgatggatgacatgcgaggccagtttcttgat
cttttgtcagacattggctttgttgacaaagctaaaggaatcaaggcatataaccactat
gggcatgatatggaaatgatttctgctattctatgtgctgggctttaccctaatgtcatc
ctgtgcaaaaaaagagggaagaggacagcattctacagtaaggacgtcgggaaagtggac
atccatcctgcttctgtgaatgcaggggtccacttgtttcctctgccctacttggtttac
agtgagaaggtgaaaactacgagcatttatatcagggactcaactaacatatcagagtat
gctttgcttctttttggaggcacactcaagccaagcaaaactggggaggatatcacaatg
ctaggaggctatcttcatttttctgcaccaaaaagtgtgatacaactgattcagagattg
agaggggagctcgatagacttcttcaaaggaaaattgaggaaccacgactagatgtctac
tcagaaggaaagggtgttgttactgcagctgttgaactgttgcacagctga
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