Asparagus officinalis (garden asparagus): 109836425
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Entry
109836425 CDS
T05243
Name
(RefSeq) pre-mRNA-processing factor 19-like
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03040
Spliceosome
aof04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109836425
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
109836425
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aof03041
]
109836425
04121 Ubiquitin system [BR:
aof04121
]
109836425
03400 DNA repair and recombination proteins [BR:
aof03400
]
109836425
Enzymes [BR:
aof01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
109836425
Spliceosome [BR:
aof03041
]
Complex B
Other components
Prp19 complex
109836425
Complex C
Prp19-CDC5 complex
109836425
Ubiquitin system [BR:
aof04121
]
Ubiquitin ligases (E3)
U-box type E3
109836425
DNA repair and recombination proteins [BR:
aof03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
109836425
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
Beta-prop_THOC3
Beta-prop_WDR5
WD40
Beta-prop_WDR3_1st
Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR3_2nd
WD40_MABP1-WDR62_2nd
WD40_Gbeta
WDR55
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
ANAPC4_WD40
Beta-prop_WDR36-Utp21_1st
WD40_MABP1-WDR62_1st
Beta-prop_EML
Beta-prop_IFT140_1st
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
Beta-prop_Vps41
Beta-prop_WDR19_1st
Beta-prop_HPS5
Beta-prop_IFT122_1st
Beta-prop_DCAF12
Beta-prop_SCAP
Beta-prop_EIPR1
Beta-prop_Aladin
Beta-prop_WDR41
Beta-prop_SPT8
WDR90_beta-prop_4th
U-box
NBCH_WD40
Beta-prop_DCAF4
Beta-prop_ACSF4
eIF2A
RMC1_N
Beta-prop_Nup120_160
zf-Nse
PAS_11
KNTC1_N
PUMA_CC
V_ATPase_I_N
Motif
Other DBs
NCBI-GeneID:
109836425
NCBI-ProteinID:
XP_020259907
LinkDB
All DBs
Position
4:complement(4903959..4921814)
Genome browser
AA seq
524 aa
AA seq
DB search
MICSISGEVPEEPALSKKSGLLFERRLIERHIAEYGKCPVTKEDLTMDDIMPVKTNKVVK
PRPLQAASIPGLLGMFQNEWDALMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKK
ERDEARTLLVQAERQIPLSTASANANSVANNGKRAAEDELGPDGKKIRPGINPATIAELT
ECNSLLSGQRKRRQIPPTLAPIDALERYTQISSHPLHKTNKPGILSSDIHPSKDIIATGG
VDANAVLFDRASGQILCTLTGHSKKVTSVKFVPLDDLFVTGSADKTVRVWQGADDGNYSC
RNVLKDHTAEVQAVTVHATNKYFVTASMDNTWCFYDLASGSCLAQVGEASAEEGYTSAAF
HPDGLILGTGTSGALVKIWDVKSQSNVAKFDGHSGIVTAMSFSENGYYLATAALDGVRLW
DLRKLKNFRSFAPYDPDTPTNSVEFDFSGSYLAMAGSDIRVYQVANVKAEWNLLKTFPDL
SGTGKVTSVKFGGDAKYLAVGSMDRNLRIFGLPEAGDEMEESRG
NT seq
1575 nt
NT seq
+upstream
nt +downstream
nt
atgatttgctccatctccggcgaagtgccggaagagccggcgctctcgaagaaatcaggg
cttctcttcgagcggcggttaatcgaacgccacattgcagagtatgggaaatgccctgtt
actaaggaggacctcacaatggacgacattatgccggtgaagaccaacaaggtggtcaag
cctagacccttacaggctgcaagtatccctggcttgcttggaatgtttcagaatgagtgg
gatgctttgatgctatccaattttgctttggaacaacagttgcatacagcaaggcaggag
ctcagccatgccttgtatcagcatgatgccgcatgtcgtgttatagctagattaaagaag
gaaagggatgaggcaagaacgctattggtccaggcggaaagacaaattcccctgtcaaca
gcttctgctaacgcaaactctgttgctaacaacggaaaaagagctgcagaggatgagctt
ggccctgatggaaagaaaattcgtcctggtattaacccagccacaattgctgagcttaca
gagtgcaattctttgctttcaggacagcggaaaaggcggcagatacctccaacattggca
ccaattgatgcactggagagatacacccaaatttctagtcatcctcttcacaagactaac
aagcctggcattttatcttcggacatccatccttctaaggacatcattgcaactggtggg
gtggatgcaaatgcagtgctctttgatagggcatctggtcagattttatgcacgctgact
ggccactctaagaaggtcaccagcgtgaaatttgtgcctcttgatgatctgtttgtaact
ggatcagcagataagacagttcgtgtttggcaaggggctgatgatgggaattacagttgt
agaaatgtcttaaaggatcacactgccgaggtgcaagcagttacagtccatgccaccaac
aagtatttcgtgacggcttctatggacaatacctggtgtttttatgatttggcttctgga
tcatgcctggcacaggttggcgaagcttctgcggaggagggttacacttctgctgccttt
catccagatggtcttatccttggaaccggcacctctggagcccttgttaagatttgggat
gtcaaatctcagtcaaatgttgccaagtttgatggacactctggcatagtcacagcaatg
tcattttctgaaaatggctactatctcgcgactgcagcccttgatggagttaggctttgg
gatcttcggaagctgaaaaacttcagatcctttgctccgtatgacccagatactccgacg
aattctgtggaatttgacttcagcggcagctatcttgctatggctggttctgatatcagg
gtttaccaagttgccaatgtgaaggctgaatggaatctactcaaaacattcccagattta
tcaggaacaggaaaagtgacatccgtaaagtttggaggggatgcaaaatatttggcagta
ggttctatggaccgcaacctgcgtatcttcggccttccagaggcaggggatgaaatggag
gaatccagaggatga
DBGET
integrated database retrieval system
