Asparagus officinalis (garden asparagus): 109836554
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Entry
109836554 CDS
T05243
Name
(RefSeq) polypyrimidine tract-binding protein homolog 3-like isoform X1
KO
K14948
polypyrimidine tract-binding protein 2
Organism
aof
Asparagus officinalis (garden asparagus)
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aof03041
]
109836554
Spliceosome [BR:
aof03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
109836554
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RRM_5
RRM_1
RRM_8
RRM_occluded
RL
RRM_PARP14_3
P_C10
Motif
Other DBs
NCBI-GeneID:
109836554
NCBI-ProteinID:
XP_020260065
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All DBs
Position
4:complement(9301172..9309647)
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AA seq
444 aa
AA seq
DB search
MSDPSKVLHIRNVGHEISENDLLELVQQFGIVNKLVMLRAKNQALLQMEDVSSAVSAVEY
YTSVQPSVRGRNVYIQFSSHQELTTAEQNSHRQKGADQDSQPNRILLVTIHTMLYPITVE
VLHQVFSPYGFVEKIVTFQKSAGFQALIQFQSQQNAVEAMNSLQGRNIYDGCCQLDIQFS
NLSELQVNYNNERSRDFTNSSLPTEQRGRSSQAGYGDGGYYGYQPHGGRGAYGQMGAILA
AFGGSLPPGVTGTNDRCTLLVTNLDPDKIDEDKLFNLFSIYGNIVRIKLLRNKPDHALVQ
MGDGFQAELAMHFLKGAMLFGKRMEVNFSKFPHITPSSDVHEYTGSSLNRFNNNAVKNYR
YCCSPTKMIHISSLPQDIAEDDLLTHLEEHGTIINSKLFEVNGKTQALVLFDDEEQATEA
LVCKHASTINRSVIRISFSQLQSI
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atgtcagatccatccaaagttcttcacatccgaaacgtgggtcatgaaatatctgagaat
gatttgctggaactggttcagcaatttggcattgtcaataagcttgtaatgttacgggca
aaaaatcaggctcttcttcagatggaagatgtgagttctgctgttagtgcggttgaatac
tatacaagcgttcaacccagtgttaggggaaggaacgtttatatacaattctcgtctcat
caagagctaactacagcagaacagaactctcatagacagaagggtgcagatcaggattcg
caacccaatcgaatcctcttagtcactattcacacaatgctctatcctataacggtggaa
gtgctgcatcaagtgttttctccatatggatttgtagagaagatcgtcacctttcagaag
tcagctggctttcaagctcttatacaatttcaatcacagcaaaatgcggtggaagcaatg
aattctctacaagggcgcaacatttatgatggctgttgtcaactagacatacaattttcc
aatctcagtgaactgcaagttaattacaacaatgagcgatcaagagatttcactaattcc
tccttaccaactgaacaaaggggccggtcttcacaagctggatacggtgatggtggctat
tatggatatcaaccgcacggcggcagaggtgcatatggacagatgggtgcaattttagct
gcatttggtggtagcttgcctcctggagtgactggtacaaacgataggtgcacactattg
gtcactaacttggatcctgataaaattgacgaagacaagctcttcaacttgttctctata
tatggcaacattgtgagaatcaaattgttgcgcaataagcccgatcatgcgcttgttcaa
atgggggatggttttcaggcagagctggctatgcacttcttaaagggagctatgttgttt
ggtaagaggatggaggtgaatttctcaaagttcccacacataaccccatcctctgatgtc
cacgagtacacaggatccagccttaaccgcttcaacaacaatgcagtaaagaactatcga
tactgctgctctccaacgaagatgatccatatctcctccctccctcaggacatcgctgag
gatgatcttttgacccatttggaggagcatgggaccattattaacagcaagcttttcgaa
gtgaacggaaagacacaagctttggtcttgtttgacgatgaggagcaggcaactgaggct
ctcgtatgcaagcatgcgagcaccatcaaccgttcagtaatcagaatttccttttcccag
cttcagagtatctaa
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