Asparagus officinalis (garden asparagus): 109836911
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Entry
109836911 CDS
T05243
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 6-like
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109836911
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aof03019
]
109836911
03036 Chromosome and associated proteins [BR:
aof03036
]
109836911
Enzymes [BR:
aof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
109836911
Messenger RNA biogenesis [BR:
aof03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
109836911
mRNA degradation factors
5'-3' decay
Decapping complex
109836911
Chromosome and associated proteins [BR:
aof03036
]
Eukaryotic type
Gene silencing
piRNA pathway
109836911
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Aldedh
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
109836911
NCBI-ProteinID:
XP_020260542
LinkDB
All DBs
Position
4:22031600..22047098
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AA seq
492 aa
AA seq
DB search
MNQRGRYPPGIGNGRGADGPPNPSPNPNPNYYGRNPNQQHQLQQQFSQRGNQMQSPQQFQ
QQWLRRNQIGGDAGSSEVSKPRQSQAIDSSSPDWKAQLKIPPRDTRYKTEDVTASKGNEF
EDYFLKRELLMGIYEKGFESPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKI
DQDNNVIQVVILVPTRELALQTSQVCKELSKHLQIQVMVTTGGTSLKDDIMRLYQPVHLL
VGTPGRILDLAKKGVCVLKDCSMLIMDEADKLLSPEFLPSVEQLIRFLPANRQILLFSAT
FPVTVKDFKDRYLPKPYIINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSII
FCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGID
IQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQ
IPAQIDQAIYCR
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atgaatcagagagggagataccctcctggaatcgggaacgggcgaggggccgatggaccc
ccaaaccctagcccgaaccctaaccctaattactatggccgaaaccctaatcagcagcat
caactgcagcagcagttctctcagaggggaaatcagatgcagagtccgcaacaatttcag
cagcagtggttgaggaggaatcagatcggaggcgatgctggatccagtgaggtttcaaag
cctagacaatcacaagctattgattctagctccccggattggaaggcacagttaaagata
ccaccacgtgatactcgttacaaaacagaggatgtaacggcttctaaaggaaatgagttt
gaagactattttcttaagcgggagctgcttatgggaatatatgagaagggttttgaaagt
ccttctcctattcaggaagagagcatcccaatcgctctgaccggaagtgacattcttgct
agagctaaaaatggaactggaaagacagctgctttttgtattcctgcactagaaaagatc
gatcaagataacaatgttattcaagttgttatactagttcctacacgagaattggctctt
cagacgtcacaagtctgcaaggaactcagtaagcatttgcagattcaagttatggtcacc
accggaggaactagcttgaaagatgatatcatgagattgtatcaacctgtccatttgctt
gttggcacaccgggtcggattcttgatcttgcaaagaaaggtgtttgcgtcttgaaggat
tgttcaatgcttattatggacgaggcagacaagcttctatctcctgaatttctaccttca
gtagagcagcttattcgttttcttcctgcaaatcgacagattttgttgttttctgcaact
tttcctgtaaccgtgaaggatttcaaagacagatacctgcctaaaccatatataattaat
cttatggatgaactgaccctaaagggaatcactcagtattatgcatttgtagaagaaagg
cagaaagtccactgcctaaacacccttttctcaaagcttcaaatcaaccaatctattata
ttttgcaattctgtcaaccgggttgaattattggccaagaagatcactgaacttggctat
tcttgcttctatattcatgctaagatgttgcaagatcatcggaatcgagtgttccatgac
tttcgtaatggtgcatgcagaaatcttgtttgcacagatttgtttacaaggggtattgat
attcaagcagttaatgttgtcatcaactttgacttccccaagaactcagagacatatcta
cacagggttggacgttcaggaaggtttggtcaccttggtttagcagtgaatttgatcacc
tatgaggaccgtttcaacttatacaggattgaacaagaactgggtactgaaataaagcag
attcctgctcagatagatcaggctatttactgcagatga
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