Asparagus officinalis (garden asparagus): 109837090
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Entry
109837090 CDS
T05243
Name
(RefSeq) protein CTR9 homolog isoform X1
KO
K15176
RNA polymerase-associated protein CTR9
Organism
aof
Asparagus officinalis (garden asparagus)
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aof03021
]
109837090
Transcription machinery [BR:
aof03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
PAF1 complex
109837090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_8
TPR_14
TPR_19
TPR_12
TPR_16
TPR_17
TPR_CcmH_CycH
TPR_11
TPR_9
TPR_6
TPR_MalT
TPR_10
TPPII_C
ANAPC3
DUF7017
Motif
Other DBs
NCBI-GeneID:
109837090
NCBI-ProteinID:
XP_020260763
LinkDB
All DBs
Position
4:30827456..30899965
Genome browser
AA seq
1070 aa
AA seq
DB search
MASVYIPVQNSEEVVRVVLDQLPRDADDILDILKAEQAPLDLWLTIAREYFKQGKFEQFR
KILEEGSSPEIDEYYADIKYERIAILNALGAYHTYLGKTETKQREKDEHFQLAIQYYNRS
SRIDVHESSTWIRKGQLFMAKGDIQQASCFFKIVLDEDPNNVPALLGQACVEFNLGENEE
QPNKALVSYSNSLKLFRRALQVHPNCPGAVRLGIGLCCYRLGPTEKAQQTFRRVLQLDPE
NVEALVALGITDLQTDEAIGIQKGMEKLQRAFEIYPYCSMALNHLANHFFFTGQHFLVEQ
LTESALATSNHALTRSHSYYNLGRSYHSKGDFEKAGCYYMASVKEINRKQDFVLPYYGLG
QVQLKSGDLRSSLSNFEKVLEVYPENCECLKTVGHIYIQLHKNEKALEIFRRATRSDPRD
AQAFIELGELLISSDPQAALDAYRSALSLSKKDDKGVPTEILNNMGVLYFETGEFEMAAQ
TFKEALGDGIWVSFLNGSVDCSTFSMQYRDLSPFHQLKEDGASLNLPWDKVTILFNYSTL
LEKLHDTEKASILYQFLLFKYPNYIDAYLRLAAIAKSRNNIPLSIALIGDALRIDDKCHD
ALCMLGSLELKNDDWLRAKDTFRAAREATHEKDSYSTLFLGNWNYFAATPCEKRFANFEA
MHLEKAKDLYTKVLKLHPGNLYAANGTGAILAEKGHLNVSKDIFSEVQEAASGSIFVQMP
DVWVNLGHVYFAQAHFVLAVKMYQNCLRKFYYNTDTEILLYFAFTHYWAEQWKECKRTLQ
RAIHLAPSDYTLRFDLGVALQKFSASTLQKKKRTADEVWTTVTELKHAIRVFSQLYAASS
YHIHGFDERKIKIHVDYCKHLLDAAKVHLEAAECEEQQKRQRLEVARQLKLAEEAQRKAE
EQKKIQAERKNRKEELEQFMQQDEHLKRIQEQLKIFASKASSKLKERTKVEHDESGVGGK
RRRKGGKRTKRGKKSKTRFEHEQEQEQEQEAEMGNEPKAVDEGDANMMNYQEEDGADTAR
DNSVAAGLEDSDAEEDMGAPSNRKKRSLAEFGDEDDQPSKPHPKLKVTLT
NT seq
3213 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccgtttacattccggttcaaaactctgaagaggtggtgagggttgtcctcgac
caattgccgagggacgccgacgacatcctcgacatcctcaaagccgagcaagctcctctt
gatctctggctcacaatcgctagagaatactttaagcaaggaaaatttgaacaatttcgg
aaaatattggaggaaggttccagcccagaaatcgatgagtactatgctgatataaagtat
gagcggattgctatcctaaatgcattaggggcatatcatacttatctggggaagactgaa
acaaaacaacgagagaaggatgagcattttcagttagcaattcaatattacaacagatca
tcaaggattgatgttcatgaatcctcgacatggatcaggaaaggtcagcttttcatggcc
aaaggtgatatccagcaagcttcttgtttctttaaaatagtattggatgaagatcctaat
aatgttcctgctcttcttggacaagcttgcgttgagtttaacctgggagagaatgaagag
cagcccaataaagcactagtttcatatagcaactctttgaagttatttaggagggcattg
caagtgcatcctaactgtcctggagctgtgagacttggtataggtctatgttgctataga
ctggggccgactgaaaaagctcaacaaaccttccgtcgagttcttcaattagatcccgaa
aatgttgaagctctagttgcacttggaattacagatttgcaaacagatgaagctattgga
attcagaagggaatggaaaagttgcaaagggctttcgaaatatacccttattgttcaatg
gcactaaatcatctggcaaaccactttttctttactgggcagcattttttggtcgaacaa
ttaactgaatctgctcttgctacgagcaatcatgccttgacaagatcacattcttattac
aatttgggaagatcttaccatagtaagggtgattttgagaaagctggctgttactatatg
gcatctgtcaaagaaatcaacaggaaacaggactttgtgttgccgtattatggtctggga
caagtccaattaaagtcaggagatcttagaagttctctttcaaactttgagaaggtgttg
gaggtttaccctgaaaattgtgaatgcttgaagactgttggacacatttatattcagctt
cataagaatgaaaaggcgttagaaatctttcggagggctactcgaagtgacccaagagat
gctcaagcatttattgagctgggggaattgttgatatcatctgatcctcaagctgcttta
gatgcatacagaagtgctcttagtctctccaagaaggacgacaaaggagtaccaacagaa
atacttaacaatatgggagttctctactttgagacgggtgaatttgagatggcggcacaa
acattcaaggaggctttgggggatgggatctgggtttctttcttgaatggtagtgtagat
tgcagtactttctccatgcagtacagagatctgagtccattccatcaactcaaagaagat
ggtgcatctttgaatctgccttgggataaagttactatactattcaactattctacattg
cttgaaaagttgcatgatactgagaaagcaagcatcctttatcagtttttattattcaag
tatccaaactatattgatgcttatttgcgtcttgctgcaatagctaaatcaagaaacaac
atcccattaagcatcgccttgataggggatgctcttaggatcgatgacaagtgccatgat
gctctctgcatgcttggcagcctggaactaaagaatgatgactggcttagggcaaaagat
acttttcgtgctgccagagaggcaactcacgagaaagattcttattccactcttttcctg
ggtaattggaactactttgcagcaactccttgtgagaagaggtttgcaaattttgaagca
atgcatctggaaaaggcaaaggatctctataccaaagtattgaagctgcatcctggaaac
ctatatgctgccaatggtactggagctatcttggctgaaaaaggtcaccttaatgtttca
aaggatatattttcggaggtgcaagaagctgcatcagggagcatttttgttcagatgcca
gatgtgtgggtaaatttgggccatgtttattttgctcaagcacatttcgtcttagctgtg
aaaatgtaccaaaattgcttgcggaagttctactacaacacagacacggagatccttcta
tattttgccttcactcattattgggctgaacagtggaaagaatgtaaaagaactttgcaa
agagctattcatttggcgccctcagattatacgcttcggtttgatttgggggttgccttg
cagaaattttctgcatctacactacaaaagaagaagagaactgcggatgaggtgtggaca
accgtcacagaattgaaacatgcaattcgtgtatttagccagttgtatgcagcgtcgagc
taccacattcatgggtttgacgagaggaagataaagatccatgtagattattgcaaacat
cttcttgatgctgcgaaggttcatttagaggcagctgagtgtgaagagcagcaaaagcgt
cagagattagaggttgctcgtcagcttaaattggctgaggaggctcaacgcaaggctgaa
gaacaaaaaaaaattcaggcagaaaggaaaaatcgaaaagaagagctagagcaatttatg
caacaagatgaacatcttaaacgtattcaggaacaattgaagatttttgctagcaaagca
agcagtaagctgaaagaaagaaccaaggttgagcacgacgagagtggagttggtgggaag
aggaggaggaagggagggaaaaggacaaagaggggtaagaagagtaagacacggtttgaa
catgaacaagaacaagaacaagagcaagaagctgaaatggggaatgagcctaaagcagtg
gatgaaggagatgctaatatgatgaactatcaggaggaggatggagcagacacagcacgt
gataattctgttgctgctggtcttgaagattctgatgctgaagaagacatgggagcacct
tcaaatcgcaagaaacggtccttggcagagtttggtgatgaagatgatcaaccatcaaag
ccacatccaaaactgaaggtcaccttgacatga
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integrated database retrieval system
