Asparagus officinalis (garden asparagus): 109837287
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Entry
109837287 CDS
T05243
Name
(RefSeq) small nuclear ribonucleoprotein SmD3b-like
KO
K11088
small nuclear ribonucleoprotein D3
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109837287
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aof03019
]
109837287
03041 Spliceosome [BR:
aof03041
]
109837287
03032 DNA replication proteins [BR:
aof03032
]
109837287
Messenger RNA biogenesis [BR:
aof03019
]
Eukaryotic type
mRNA processing factors
3' end processing
U7-dependent histone pre-mRNA processing factors
109837287
Spliceosome [BR:
aof03041
]
Complex A
U1 snRNP components
Sm proteins
109837287
U2 snRNP components
109837287
Complex B
U1 snRNP components
109837287
U4/U6.U5 tri-snRNP components
109837287
Complex C
U2 snRNP components
109837287
DNA replication proteins [BR:
aof03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (fungi)
Sm core complex
109837287
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
109837287
NCBI-ProteinID:
XP_020261055
LinkDB
All DBs
Position
4:41816705..41824962
Genome browser
AA seq
133 aa
AA seq
DB search
MSRSLGIPVKLLHEAAGHVVTVELKSGELYRGSMIECEDNWNCQLENITYTARDGKVSQL
EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGSALGVGRGRAVAMRARAQAAGRAG
GPPGRGVVPPVRR
NT seq
402 nt
NT seq
+upstream
nt +downstream
nt
atgagcagaagcttagggatcccggtgaagctcctccatgaggccgcaggccacgtggtg
acggtggagctcaagagcggcgagctctacaggggaagcatgatcgagtgcgaggacaac
tggaactgccagctcgaaaacatcacttacactgctagggatggtaaagtttcacaactt
gagcatgttttcattagaggcagcaaagtccggttcatggtcatacctgatatgctgaaa
aacgctcctatgtttaaaagattggatgccagaatcaagggcaaaggttccgcactaggt
gttggccgtggtcgcgctgttgctatgcgtgcccgggcacaagctgcaggtcgtgcaggt
ggcccccctggtagaggtgtagtgccaccagtaagacgatag
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