Asparagus officinalis (garden asparagus): 109837436
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Entry
109837436 CDS
T05243
Name
(RefSeq) replication factor C subunit 3-like
KO
K10756
replication factor C subunit 3/5
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03030
DNA replication
aof03410
Base excision repair
aof03420
Nucleotide excision repair
aof03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
109837436
03410 Base excision repair
109837436
03420 Nucleotide excision repair
109837436
03430 Mismatch repair
109837436
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aof03032
]
109837436
03036 Chromosome and associated proteins [BR:
aof03036
]
109837436
03400 DNA repair and recombination proteins [BR:
aof03400
]
109837436
DNA replication proteins [BR:
aof03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
109837436
DNA Replication Termination Factors
ELG1-RFC complex
109837436
Chromosome and associated proteins [BR:
aof03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
109837436
DNA repair and recombination proteins [BR:
aof03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
109837436
Check point factors
HRAD17(Rad24)-RFC complex
109837436
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RCF1-5-like_lid
RFC_C
RuvB_N
DNA_pol3_delta2
Rad17
RsgA_GTPase
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
109837436
NCBI-ProteinID:
XP_020261259
LinkDB
All DBs
Position
4:50985583..50991526
Genome browser
AA seq
462 aa
AA seq
DB search
MIQEWAPSCLSKSNWRKVDHEEGDLQPAGEWDPGLPTPRASRKPLRESDLAPAPQPQAAP
VADVVPHVPVAAAVHGRKEREYVWAYKYRPRSLDEFICNKDRVEELKEMVRKQKCGHLIF
EGPPGVGKRTMALAYLRDALGPENLKTKNELRKIELKGEHITTIDVNLRISSKHVEINLS
ELPGYEKHVLVSLINESHSPLDKPIQCDPPNFRAIVVHEADKLSTDAQFYIRWIMEKYKG
CNKIFFCCSDASKLQTIKHLCKIVELRPPSDSEIVEVLELIAKQEHIELSQHQAQKIAQN
SKNNLRQAVRSFEASWKYNSFKDEVEILTGWEDDIAKIATSIVKDQSPKQLYIIRGKLKK
LIEHDVSPDFIFSTLVCELKKQVINQFHGKIDAMYQEYKLHVTGSNSSLENVGLYSQEVS
GDKSHDQRKNVHYFMKIEEFTAKFMSYYKLSITKGIRGSGCR
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
atgatccaggagtgggccccgtcctgcctctctaagagcaattggaggaaggtggatcac
gaggagggagatctgcagccggcgggggagtgggacccgggactgccgacgccacgtgcc
agcaggaagcccttgagggagagtgatttggcgccagcgccgcagccccaggctgctccg
gttgctgatgtcgtgccccacgttccagtggccgctgcggtgcacgggcggaaggagagg
gagtatgtttgggcgtataagtacaggccgaggtccctggacgagtttatttgtaacaag
gatcgggttgaggagctaaaggagatggtgagaaagcaaaaatgcggtcatcttatattt
gagggtcctccaggggttgggaagagaactatggctttagcatacttgcgagatgccttg
ggacctgaaaatttgaagacaaaaaatgaattgaggaaaattgaactaaagggtgagcat
atcaccaccattgacgtcaatctgagaatatcatccaaacatgttgagattaatttatct
gaattgcctggatatgaaaagcatgttcttgtgtctctgataaatgaatcccattctcca
ttggacaaacccatccaatgtgatcctcctaattttcgagcaattgttgtgcacgaggct
gacaagctttcaacagatgctcagttttatattcgctggatcatggagaagtacaagggc
tgtaataagatcttcttttgctgctctgatgcctcaaagcttcaaacaataaaacatctt
tgcaaaatcgtagaactccgaccaccttcggatagtgagatcgttgaagttctggagctc
attgcaaaacaagaacatattgaattgtctcaacatcaagcacaaaaaattgcgcagaac
tcgaagaacaaccttcgacaggcagttcgttcatttgaagcctcctggaagtataattca
ttcaaggatgaagtggagatcttgactggatgggaagatgatattgctaaaatagctacg
agtattgttaaggatcaaagcccaaagcagttatatattatccgtgggaagcttaaaaag
ctgattgaacatgacgtatcaccagattttattttcagtactctggtttgtgaactgaag
aagcaagtgatcaaccagttccatggcaagatcgatgctatgtatcaggagtacaagctt
catgtcactgggtctaactcgagcctggagaatgtgggactttatagtcaagaggtttct
ggcgacaagtctcatgaccagcgaaaaaatgttcactacttcatgaagattgaagaattt
actgcaaagtttatgagctactacaaattgtcaataaccaaaggcatcaggggaagtggt
tgtcgttga
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