KEGG   Asparagus officinalis (garden asparagus): 109837638
Entry
109837638         CDS       T05243                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit 4
  KO
K03012  DNA-directed RNA polymerase II subunit RPB4
Organism
aof  Asparagus officinalis (garden asparagus)
Pathway
aof03020  RNA polymerase
aof03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:aof00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    109837638
  09124 Replication and repair
   03420 Nucleotide excision repair
    109837638
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:aof03021]
    109837638
   03400 DNA repair and recombination proteins [BR:aof03400]
    109837638
Transcription machinery [BR:aof03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     109837638
DNA repair and recombination proteins [BR:aof03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      109837638
SSDB
Motif
Pfam: RNA_pol_Rpb4 COG6_N CCCAP EF_TS
Other DBs
NCBI-GeneID: 109837638
NCBI-ProteinID: XP_020261870
LinkDB
Position
1:complement(123315457..123322170)
AA seq 138 aa
MSLEEEENAAELKIGDEFLKAKCLMNGEVARILDKRLDQLQQFSDDPSNQISQVFEKSHQ
YVKRFSRFKNNDAVTQVREVLSRYQLTEFELVVIGNLCPETVEEAIAMVPSMKSKGRGLD
DDAIEKMLHDLSLIKKFE
NT seq 417 nt   +upstreamnt  +downstreamnt
atgtctttagaggaggaagaaaacgcagccgagctcaaaatcggcgatgagttcctgaag
gcaaaatgcttgatgaatggtgaagttgcgaggattcttgataagagattggatcaactt
cagcaattctccgatgatccttcgaaccaaatttcgcaggtgtttgagaaatctcatcag
tatgtgaagcgctttagccgattcaaaaataacgatgcagttacacaagttcgagaagtt
ctaagccggtatcagttgaccgagtttgagcttgttgttattggcaatctttgtcctgaa
accgtagaggaagctatagctatggtcccgtctatgaagtcaaaaggccgtggtcttgat
gatgatgccattgagaagatgctgcatgatctctctctcatcaagaaatttgagtag

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