Asparagus officinalis (garden asparagus): 109837788
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Entry
109837788 CDS
T05243
Name
(RefSeq) pre-mRNA-processing protein 40A-like
KO
K12821
pre-mRNA-processing factor 40
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109837788
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aof03041
]
109837788
Spliceosome [BR:
aof03041
]
Complex A
U1 snRNP components
U1 related factors
109837788
Complex B
109837788
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
Motif
Other DBs
NCBI-GeneID:
109837788
NCBI-ProteinID:
XP_020261731
LinkDB
All DBs
Position
4:79711771..79740173
Genome browser
AA seq
1040 aa
AA seq
DB search
MASFPQPPGAQSVRPPLAGSTGPPQNYGLPMPVQFTPVGLTQQSHQFIPAPSQQFQPTQS
VSSSFVGVPPPPQFAPPVQILSRSSHPGQSPVSSQTIPAPYIQSNASFSPGMQSQQNSQF
QSNHLVNLGGGGMPLSSSYTFSTSYDQQPNTANAPLQYQSVPQMRASFPPAVEQAWRTSG
VPVSGSLHAVQTSAGLPETNSLQSAQQSSAVAAAVSMTNVPSIATQQSSDWQEHLSSDGR
RYYYNKKTKQSSWKKPVELMTPIERADASTAWNEYTSPDGRKYYYNKLTKQSKWTIPDEL
KIAREQVLKMGVQSIQSETGATSLGSVSLPLPALQTSSASATSNFTSITTSAIGSSPSSA
SLVVNSVDPPGLVASESPSTSAVPSTEVPSNSPMPNITAPINPVPVSSSTASVVVEDTMN
TTADATAATTKTINENSSLSSVEKVADGKSPEDLEEAKRATPLAEKVKLVQIEDKLIVEE
PLAYANKQEAKNAFKALLESTNIESDWSWEQAMRVIINDKRYGALKTLGEKKQVFNEYLG
ERKKQEGEERRIRQKKAREDFIKMLEESKELTSSTRWRKAEAMFESDERFNAVERAKDRE
DLFESYIAELQKKERAKAAEERKRNFMEYRAFLESCDFIKANSQWRKVQERLEIDERCSR
LDKFDRLKIFQDYVNDLEKEEEEQQKIQKEQLRKAERKNRDDFRKLMEEHVAAGILTAKT
HWRDYYAEVKDFPSYVAVSSNTSGATPKVLFEDVTEELEKQYREDKARVKDAVKMGKVLK
IPLFSIFTQVQYMLAATEHGECLFAKKLSETNLKLIFKELLEKLREKEEKEAKKRQRLVD
NFSNLLYSSKEISASSTWEDCKSLLADCQQHSSAGEESCMREIFEKHVSHLQEKANEKER
KREEEKAKKEKGREDKEKRRDRKDKERDHEKERGKRRSRKDETDSENVDIGDNSSVDDKS
RSRDRERKRRKHHRSEADEEKDEKEKYKKSHRHSSDHKKSRKRASESDGESQHRKHKKDR
EGSHRNSSYEDLEDGELGDD
NT seq
3123 nt
NT seq
+upstream
nt +downstream
nt
atggctagtttcccacagccgcctggagcccagtctgttaggcctcctctagcaggatca
acaggtccacctcaaaattatggtctacctatgccagtgcagtttacacctgttggtcta
actcaacaatctcatcagtttataccagcaccttcccaacaattccaacccacgcaaagc
gtgtcctcttcatttgttggagttcctccccctccccaatttgctcccccagtacaaata
ctttcaaggtcaagtcatcctggtcaaagtccagtttcatcacaaacaattccagctcca
tatattcaatcaaatgcatctttctctcctgggatgcagtcccagcagaactctcagttt
cagagcaatcatctggttaatctaggtggtggaggaatgcctctttcttcatcttatacg
ttctcaacgtcttatgaccagcagccaaatactgcgaatgccccattgcagtatcaatca
gtacctcagatgcgagcttcttttccgcctgctgtggaacaagcttggcgaacttctggg
gttccagtttcaggctcactgcatgctgtccaaacatctgctgggcttccagaaacaaat
tcacttcagtctgctcaacagtcatcagctgtagctgctgcagtttctatgacaaatgtt
ccatctatcgctactcagcagtcttctgattggcaagagcatttatcctctgatgggaga
agatattactacaataagaagaccaagcagtctagttggaaaaagcccgtggaattgatg
acaccaattgagagggctgatgcttctaccgcatggaacgagtacacctctccagatgga
cggaagtactattataacaagctcactaagcaatctaaatggactattcctgacgaactc
aagatagctcgtgaacaagtattaaagatgggagttcaatctatacagtcagagactggg
gcaacttctcttggctctgtttctttaccccttccagcacttcagacttcttctgcgtca
gcaacaagcaatttcacgtctataacaacatctgctattggatcaagtccgtcttcagcg
agccttgttgtaaattctgttgaccctccgggtttggtggcatctgaatcaccatctact
tctgctgtgccttccaccgaagtgccttctaattctcccatgcctaatatcactgcacct
atcaaccctgtacctgtttcatcatctacggcttctgtggttgttgaggatacaatgaat
acaacagcagatgctacagcagcaacaacaaagaccattaatgagaattcatctctttca
agtgtagaaaaagtggcagatggaaaatctccagaagatctggaggaggccaaaagagct
actccacttgctgaaaaagtcaaacttgttcagatagaggataaactgattgttgaagaa
ccattggcgtatgctaataagcaggaggctaagaatgccttcaaagcactattggaatca
acaaatattgaatctgattggagttgggaacaagctatgagagtcatcattaatgacaaa
agatatggtgcgttaaagacacttggagagaaaaaacaagtgtttaatgagtatttgggt
gaaagaaagaaacaggaaggtgaagaaagacgcatcaggcagaaaaaagcgcgtgaagat
tttatcaaaatgttagaagagtccaaggaattgacatcatcaactagatggaggaaagct
gaggccatgtttgaaagcgatgagagattcaatgctgttgaacgagcaaaagatcgtgaa
gatctttttgaatcttacattgctgaacttcagaagaaggagagagcaaaggcagctgaa
gagcgtaaacggaacttcatggaatacagagcgtttcttgaatcttgcgacttcatcaag
gcaaacagccaatggagaaaagttcaagaacgcctggagattgatgagagatgctctcgg
cttgataaatttgatcgattaaaaattttccaggattatgtaaacgatttggagaaagag
gaggaggaacaacagaagatacagaaggagcaattgagaaaagcagagcgcaaaaatcgt
gatgattttcgcaaattgatggaagaacacgttgctgctggcattcttacagcaaaaact
cattggcgtgattattatgcagaggttaaagattttccatcatacgttgcagtctcatca
aacacctcaggtgcaacacctaaagttctctttgaagatgtaaccgaggagctagaaaaa
cagtatcgtgaggataaggcacgagtcaaagatgcagtgaaaatgggaaaagtactcaag
atccccttgttttctatatttactcaagttcaatatatgttggctgccactgaacatggc
gaatgcttgtttgcaaaaaaattatctgagactaacttgaagcttatatttaaggaattg
cttgaaaagctgagggaaaaggaggagaaagaagctaaaaagcggcaacgtctggttgat
aatttttctaatcttctttactcatccaaggaaatatccgcatcttcaacatgggaggat
tgcaagtcattgcttgcagattgccaacaacacagttctgctggtgaagagagctgtatg
agggagatttttgaaaaacatgtctcacatttgcaagagaaagcaaatgagaaggagcgc
aaaagagaggaagaaaaggcaaagaaagagaaagggagagaggataaagagaaaagaagg
gacagaaaagataaggaaagagatcatgaaaaggaaaggggaaaacgacgatctagaaag
gatgaaacagacagtgaaaatgttgatattggagataactccagtgtggatgacaaaagc
aggagcagggacagagagagaaaacgtaggaaacatcatcgcagtgaagcagatgaagag
aaagatgagaaagaaaagtacaagaagtcccataggcacagcagtgaccacaagaaatcc
cggaagcgtgcctctgaatccgacggtgaaagccagcacaggaagcacaagaaagatcga
gaaggatcgcacagaaatagttcctatgaggatcttgaagacggtgaacttggagatgat
tga
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integrated database retrieval system
