Asparagus officinalis (garden asparagus): 109839540
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Entry
109839540 CDS
T05243
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03020
RNA polymerase
aof03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
109839540
09124 Replication and repair
03420 Nucleotide excision repair
109839540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aof03021
]
109839540
03400 DNA repair and recombination proteins [BR:
aof03400
]
109839540
Enzymes [BR:
aof01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
109839540
Transcription machinery [BR:
aof03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
109839540
DNA repair and recombination proteins [BR:
aof03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
109839540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
RNA_pol_Rpb2_3
Motif
Other DBs
NCBI-GeneID:
109839540
NCBI-ProteinID:
XP_020263607
LinkDB
All DBs
Position
4:complement(138992448..139003618)
Genome browser
AA seq
1211 aa
AA seq
DB search
MEMNDEYMMEAEEEEEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDE
SADIEIRPESHRQSEFVETIYKIGFGQIYLSRPMMTESDGETQTLFPKAARLRNLTYSAP
LYVDVTKKIIKKGHDCEEVAETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPY
DQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKFAYVAEVRSMAENQNRPASSMFVR
MLSRTSAKGGSSGQYIRATLPYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMEL
LRPSLEEAFVIQNQQVALDYIGKRGATVGVTKEKRIKYAREILQKEMLPHVGVGEYCETK
KAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQ
KCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTYASTLSH
LRRLNSPIGREGKLAKPRQLSLGMMCPAEHLKRQGLIGACGLVKNLALMVYITVGSAAHP
ILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGVHRNPELLVKTLRQLRRQIDVNTEV
GVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKKHIRALQQREAPEEGWHDLVAKGF
IEYIDTEEEETTMISMTINDLINARQNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHN
QSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGIN
AIVAISCYSGYNQEDSVIMNQSSIDRXXXXHIGMVVAITFLPVWFPNMYDSNVNTVIKLC
LRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPI
PQDDAQGQASRYSRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKF
SSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK
EGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVD
DKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRV
HVCEKCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKEV
KPTKDQKKKGT
NT seq
3636 nt
NT seq
+upstream
nt +downstream
nt
atggaaatgaacgacgagtacatgatggaggcggaggaggaggaggaggaggaggagatc
actcaagaggacgcgtgggcggtcatcagcgcttacttcgaggagaagggattggtccgc
cagcagctcgactccttcgacgagttcatccagaacacgatgcaggagatcgtcgatgag
tccgccgacatcgagatccggcccgagtcccaccgccagtccgagttcgttgagacgata
tataagatcgggttcggtcagatttatttgagtaggccgatgatgacggaatcggacgga
gagactcagaccttgtttccgaaggcggcgaggttgaggaatttgacgtactcggcgcct
ttgtatgttgatgtgactaaaaaaatcataaagaaaggtcatgactgtgaggaagttgca
gagacccaagatttcactaaagtcttcattgggaaagttcccataatgttgaggtcgagt
tattgcacgctgtatcagaattctgaaaaagatttgactgagcttggtgaatgcccgtat
gaccaaggagggtattttataatcaatggaagtgagaaggttttgattgcacaggaaaag
atgagcacgaatcatgtgtatgtctttaagaaaagacagcccaacaagtttgcgtatgtg
gctgaagtccgttctatggcggaaaaccagaataggcctgcaagcagcatgtttgtacgc
atgctctctcgtaccagcgccaaagggggttcttcgggacagtatattcgagcaacactt
ccatatataagggcggatatccctataataattgttttccgagctttgggttttgttgct
gataaagatatattggagcatatatgttatgatttttctgatacacaaatgatggagcta
ttgcggccctcacttgaagaagcatttgttattcaaaaccaacaggttgcattggattat
ataggaaagcgtggggcaactgttggagtgacaaaggagaagaggattaagtatgcaaga
gaaattcttcaaaaagagatgttgcctcatgttggtgttggggagtactgtgagacaaaa
aaagcatactattttggatatatcattcatcggcttttgctgtgtgcacttggccgaaga
cctgaggatgatagggatcattatggaaacaaacgacttgaccttgctggtccattgctt
ggaggcttatttagaatgcttttcagaaaattgacccgggatgtgcgatcttatgttcaa
aagtgtgtggacaatggaaaagatgtcaatctgcaatttgctattaaagctaaaactatc
acaagtggtcttaagtactctcttgctactggaaactggggacaggctaatcaagctggt
accagggcaggggtttcacaggtgttgaatcgtctaacttatgcatctactctctctcac
ttgcggagattgaactctcctataggccgtgaaggaaaattggctaagcctcgccagctg
tcactgggaatgatgtgtcctgctgaacacctgaagcgacagggtttgatcggtgcttgt
ggattggtgaagaaccttgctctgatggtatacataacagtgggatcagctgcacatcca
attttggagtttttggaggagtggagtacagaaaactttgaggaaatatctccagctgtt
attcctcaagcaactaagatttttgttaatggctgctgggttggtgttcacagaaatcct
gaactcctggtgaagactttgagacaattaaggagacagattgatgtgaacactgaggtg
ggagtcattcgggacattcgtctgaaggaactacgactctatacagattatggtcgatgc
agtcgtccactatttattgtagaaaaacagaggctacttataaagaaaaaacatattcga
gctctgcagcaaagggaagctccggaagaaggttggcacgatctggttgctaaagggttc
atagagtacattgacaccgaggaagaagaaactactatgatatccatgactatcaatgat
cttataaatgcgaggcaaaatcctgaggaagcatattctgaaacttatacccattgtgag
atccacccatcactgatactgggtgtttgtgcatcaatcatcccattccctgatcataac
cagagtccccgtaatacataccaatcagcaatgggtaaacaagctatgggaatctatgta
acaaattatcagctgagaatggatacattagcctatgttctttattatccacaaaagcct
cttgtcactacccgtgcgatggagcatttacattttcggcagcttcccgctggcatcaat
gcaattgttgctatttcctgttactctggatacaaccaagaagactctgttatcatgaat
cagtcttcaattgatcgtnnnnnnnnnnttcatataggtatggtagttgcaataactttt
ttgccagtttggtttccgaatatgtatgatagtaatgttaacactgttataaaactctgc
ctcagagatgaggagaagaagatggggacccttgttaaagaagattttggccgtccaaac
agggaaaatacaatgggcatgcggcatgggtcgtatgacaagttggatgacgatggtctt
gcacctcctggtacacgcgtctctggtgaagatgtcataattggaaagacatccccaatt
cctcaagatgatgctcaaggacaagcttcaagatactctaggcgagatcacagtacaagc
ttacgccacagtgaaagtggaatggtggatcaggtcttgttgactacaaatgctgatggt
ctgagattcgtaaaagtaagaatgagatccgttcggattcctcaaattggagataaattt
agcagtagacatggccagaagggaactgttggcatgacttacacccaagaggatatgccg
tggactgtggaaggcatcacacctgatattattgttaatccacatgctattccttctcga
atgaccattggccagctcattgaatgtattatggggaaggttgctgctcatatgggaaaa
gagggagatgctactccttttactgatgttaccgtggacaacatcagcaaagctctccat
aagtgtggatatcaaatgcgtgggtttgaaactatgtacaatggtcacactggtcgtaga
ttgagtgcaatgatattccttggtccaacttattaccagagattaaagcatatggttgat
gacaagatccattctcggggacgtggccctgtacagatccttaccagacagccagcagaa
ggaaggtctcgtgatggaggtctgcgctttggagagatggagagagattgcatgattgct
catggtgctgctcatttcctcaaggaaaggctatttgaccaaagtgatgcttacagggtt
catgtttgcgaaaaatgtggtctcattgctattgctaacctcaagaagaattcatttgag
tgtaggggctgcaaaaacaagactgatattgttcaggttcatattccttatgcatgcaag
ctgctattccaagagctaatggccatggcaatcgcgccaaggatgctgactaaggaagtg
aaaccaaccaaagaccaaaagaagaaaggcacttaa
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integrated database retrieval system
