Asparagus officinalis (garden asparagus): 109840008
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Entry
109840008 CDS
T05243
Name
(RefSeq) LOW QUALITY PROTEIN: RNA polymerase II-associated protein 3
KO
K23002
RNA polymerase II-associated protein 3
Organism
aof
Asparagus officinalis (garden asparagus)
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aof03021
]
109840008
Transcription machinery [BR:
aof03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
109840008
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RPAP3_C
TPR_1
TPR_2
TPR_8
TPR_11
TPR_12
TPR_BSK1_C
TPR_17
TPR_9
ANAPC3
TPR_10
Coatomer_E
TPR_19
TPR_16
ARM_TT21_C
ARM_TT21_4th
MtrD
Motif
Other DBs
NCBI-GeneID:
109840008
NCBI-ProteinID:
XP_020264087
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All DBs
Position
5:complement(3323152..3330084)
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AA seq
471 aa
AA seq
DB search
MSGKDRPLGSLRSIGKLGEEKGPSRKVAANEAKKRATAISGSTSGDHDKHYLNYARAVGQ
FPSSFLSDEKLPDAASEKXGLHQDGNECFKQKKYLEAIDCYSRSIALSPTSVAFANRAMA
YIKLKRYEEAESDCTEALNLDDRYVKAYSRRATARKELGKFKASIEDSEFAISLEPNNVE
LRKQYTEARELLEKEISKKHSGPSKSSGQGIKRANILDAAMKGVQDLPSVSSTAAMASAT
SVQTGNVDTTSGKAFSKPLIAANKVDSKGTSKEIESRDLMNGSHGTVASSSIDGGVNVQE
GVIRRKQDLDASIQNLASRAASRVMXATVKNISAPKSAYEFEVSWRALSGDSEKQSCLLK
MIPPATLPKIFKNALSAPMLIEIIKCTAAIFKEDTEFAVSILDNLTKVPRFDMIIMCLSA
VDHAEIHHQWEQVFSMKDIRADHVDVLNKLRPKFCYGQWQAHVLGSNGRPK
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atgagtggcaaagatcgtcccttgggatcattgcggagcattgggaaattaggggaagaa
aaaggaccttcgagaaaggttgctgctaatgaagctaagaaaagagctactgcaatttct
ggatctacttccggtgaccatgacaaacattatctgaactatgcaagagcagtaggtcaa
tttcctagtagcttcctgagtgatgaaaaattaccagatgcagcttcagaaaaangaggg
ttacatcaggacggtaatgaatgctttaagcaaaaaaaatatcttgaagcaattgattgt
tattcaagaagcattgcactgtctcccacatcagttgcttttgcaaatagagctatggca
tacatcaaactcaagagatatgaagaggctgaaagtgattgtacggaggccttgaactta
gatgatcgatatgtaaaagcatactctcgtcgagctacagccaggaaagaacttggaaaa
tttaaagcttctattgaagattctgaatttgcaattagccttgagcctaataacgtggaa
ctccgaaaacagtatactgaggcaagagaattgcttgaaaaggaaatctccaaaaagcac
tctggtccatcaaaaagctctggtcaagggataaaaagagctaatattttggacgcggca
atgaaaggtgttcaggatttgccttctgtgtcaagcactgctgctatggcatcagctact
tcagtacaaaccggcaatgtggatactactagtgggaaagctttcagtaagcccctaatt
gctgccaataaggtggatagcaaaggtacaagtaaagaaattgagagcagggacttaatg
aatggatcacatggaacagtagcatcaagctccattgatggaggggtaaacgttcaagaa
ggtgttatccgtcggaagcaggacctggatgcttcaattcaaaatcttgcatctcgtgct
gcgtctcgagtaatgncagccactgtaaaaaatatttcagctccaaagtcggcttatgag
tttgaagtttcgtggagagcactctctggtgattctgaaaagcaatcttgtttgctgaag
atgataccgccagctacattacctaagattttcaaaaatgctctgtctgctcctatgctg
attgaaattatcaaatgcactgcagcaattttcaaggaagacactgaatttgctgtgagc
attttagataatttgaccaaagtcccaaggttcgacatgataatcatgtgcctttctgct
gttgatcatgctgaaatccaccaccaatgggagcaagtattctccatgaaggatattcga
gctgatcatgttgatgttctcaataaactgcggccaaaattctgctatggccagtggcag
gctcatgttcttggatccaatgggcggccaaaataa
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