Asparagus officinalis (garden asparagus): 109840114
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Entry
109840114 CDS
T05243
Name
(RefSeq) cyclin-H1-1-like
KO
K06634
cyclin H
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03022
Basal transcription factors
aof03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
109840114
09124 Replication and repair
03420 Nucleotide excision repair
109840114
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aof03021
]
109840114
03400 DNA repair and recombination proteins [BR:
aof03400
]
109840114
Transcription machinery [BR:
aof03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
109840114
DNA repair and recombination proteins [BR:
aof03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
109840114
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cyclin_C_2
Cyclin_N
TFIIB
RB_B
Motif
Other DBs
NCBI-GeneID:
109840114
NCBI-ProteinID:
XP_020264217
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All DBs
Position
5:complement(90403212..90418549)
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AA seq
342 aa
AA seq
DB search
MADFQTSTHRAKWIFTPQELMEKREAANQRAIKLLEQYGSTRVEVDVDGSLSYPKPLQGN
AERHSLPKPLNCEEEQFMRVFYEQKIQEVCGAFRFPHKIQATAIIYFKRFYLQCSVMEHQ
PKHIMLTCIYSSCKVEENHVSAEELGKGXXXDHQIILNNEMIVLQNLGFDLIVYAPYRSI
EGFVEDMQEFCQARDNEQEKLKELQEAAKSEVDRMMLTDAPLLFPPGQLALAALHRSNEV
LGALNFERYLESMLSRQGVHTTTELAQTMSSIELLLGKLKIPTAKDMRHIDRKLKSCWDP
SSKDESKKREKKSKHKSKRTAAEMQDKQTLPLSNFMVEEMGV
NT seq
1029 nt
NT seq
+upstream
nt +downstream
nt
atggcggatttccagacctctactcatcgtgcaaagtggattttcacccctcaggaactg
atggagaagcgtgaagctgcaaatcaaagagctataaaattgctggagcagtatggttcc
acgcgtgtggaggtggatgttgatggttcactgtcatatcctaagcctttacagggcaac
gctgaacgacactctcttccgaaacctcttaattgtgaagaggagcaattcatgcgggta
ttttatgaacagaaaattcaagaagtttgtggagcatttagattccctcataaaattcag
gcaacagccataatatacttcaaaaggttttatttgcaatgttccgtcatggagcatcaa
ccaaaacacataatgctaacttgcatatattcttcctgcaaggtagaagaaaatcatgtt
tctgctgaggaacttggtaagggnnnnnnnnnngatcatcaaataattcttaataatgag
atgattgttctccagaatttgggatttgatcttattgtttatgcaccataccggtcaatt
gaaggctttgttgaggatatgcaggagttctgccaagcaagggacaatgagcaagaaaaa
ttaaaggagttgcaagaagctgccaaatcagaggttgataggatgatgctgacggatgca
cctcttctcttcccccctgggcagttggcattggctgctttgcacaggtcaaatgaagta
ctcggagctctcaattttgaaagatacttggagagtatgctatctcgtcagggagttcac
accacaacagaacttgctcaaaccatgtcatccattgagcttttgctgggaaaactaaaa
attccaactgctaaggatatgaggcatattgatcgaaaattaaagagctgctgggatcct
agctcaaaagatgaaagcaagaaacgagagaagaaatcaaagcacaagtcaaaaaggaca
gctgctgagatgcaagataaacaaaccctccctctgagcaacttcatggtggaggaaatg
ggggtatag
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