Asparagus officinalis (garden asparagus): 109840215
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Entry
109840215 CDS
T05243
Name
(RefSeq) LOW QUALITY PROTEIN: serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform-like
KO
K03456
serine/threonine-protein phosphatase 2A regulatory subunit A
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109840215
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
aof01009
]
109840215
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aof03019
]
109840215
03036 Chromosome and associated proteins [BR:
aof03036
]
109840215
Protein phosphatases and associated proteins [BR:
aof01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-2 (PP2A)
Regulatory subunits
109840215
Messenger RNA biogenesis [BR:
aof03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Protein phosphatase 2A
109840215
Chromosome and associated proteins [BR:
aof03036
]
Eukaryotic type
Centromeric chromatin formation proteins
Other centromeric chromatin formation proteins
PP2A (protein phosphatase 2A)
109840215
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HEAT
HEAT_2
HEAT_EZ
Vac14_Fab1_bd
Htt_N-HEAT_1
PDS5
CLASP_N
Adaptin_N
Cnd1
CEP104-like_TOG
Motif
Other DBs
NCBI-GeneID:
109840215
NCBI-ProteinID:
XP_020264363
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Position
5:94033872..94042962
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AA seq
577 aa
AA seq
DB search
MAMMDEPLYPIAILIDELKNEDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD
DEVLLAMAEELGVFIPYVGGVDYAHVLLPPLETLCSVEETCVRDKAVESLCRIGAQMKES
DLVDWFIPLVKRLAAGEWFTARVSSCGLFHIAYPSAPELLKAELRSIYGQLCQDDMPMVR
RSAASNLGKFAATVEPNHLKTEIMSIFDDLTNDDQDSVRLLAVEGCAALGKLLEPQDCVA
HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDLVPAYVRLLRDNEAEVRIAA
AGKVTKFCRILNPQLAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDATDEFPD
VRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRXXXVRLAIIEYIPLLASQLGI
GFFDDKLGALCMQWLEDKVFSIRDAAANNLKRLAEEFGPEWAMQHIIPQVLDKINNPHYL
YRMTILHAISLLAPVMGANITCQKLLPVVITASKDRVPNIKFNVAKVLQSLVPIVDHSVV
EQTIRPCLVELSEDPDVDVRYFANQALQSCDSVMMSS
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
atggcaatgatggacgagccactgtatccaattgctatattgatagatgaattgaaaaat
gaagacattcaacttcggttgaattctatccgcaggctttctactatagcacgggccctt
ggagaggaaagaaccagaaaagaattgattccgtttctaagtgaaaacaatgatgatgat
gatgaagtacttcttgcaatggctgaagaactgggcgtatttattccatatgtcggagga
gtggattatgctcatgtgttacttccacctttggaaacattgtgcagtgtggaggaaaca
tgtgtcagggataaggctgttgaatcattgtgcagaattggagctcagatgaaggaaagt
gatttggtagattggtttattcctcttgtaaagagactagcagctggcgagtggttcact
gctagagtttcttcttgtggattgtttcacattgcttatccaagtgcaccagagctgttg
aaggcagaattgaggtcaatatatggccagttatgtcaagatgatatgccaatggtgaga
agatctgctgcttctaacctaggaaaatttgctgcaacagttgaaccgaaccatctaaag
acagagataatgtcaatatttgatgatttaacaaatgatgatcaagattctgtgaggttg
ttggctgttgaaggttgtgcagcacttggaaagttgttggaaccccaagactgtgtcgct
catatccttccagtcattgttaatttctcacaggataaatcctggagagttcgttatatg
gtcgcaaatcagctctatgagctatgtgaagcagttggtccggagcctaccaggtctgat
ttggtgcctgcttatgttcggcttcttcgtgataatgaggctgaagtacgcatagcagct
gctggaaaagtgactaaattttgccggattttgaacccacaacttgcaattcagcacatt
cttccttgtgtaaaggagttatcatcagattcttcccagcatgttcgctctgctttagct
tcagtaatcatgggcatggctccagtccttggaaaggatgcaactgatgaatttcctgat
gttcgactcaatattatcagcaagcttgaccaagtgaatcaggtaattggtattgacctg
ctatcccaatcactattacctgccattgttgagcttgcagaagatagacattggcgnnnn
nnnnnggttcggctggccataattgagtacattccattactggcaagtcaattgggcata
ggtttctttgatgataagcttggtgctctttgcatgcagtggctagaagataaggtattc
tcaattcgggatgcagctgctaataatttgaagcggcttgccgaagaatttggcccagag
tgggcaatgcagcatataatcccacaggtgcttgacaagattaataatccacactactta
tatcgaatgaccattcttcatgctatttctcttctggctcctgtcatgggtgccaacatc
acatgccagaaactattacctgttgtaatcactgcctcaaaggacagggtacccaatatt
aaattcaatgtagcgaaagtattgcaatcccttgtccctattgttgaccactcggtagtg
gagcaaactattcggccatgtctcgtagagctcagtgaggacccagatgtagatgttaga
tattttgcaaatcaagcattacaatcatgtgattctgtgatgatgtcaagctag
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