Asparagus officinalis (garden asparagus): 109840545
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Entry
109840545 CDS
T05243
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109840545
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aof03019
]
109840545
03041 Spliceosome [BR:
aof03041
]
109840545
03009 Ribosome biogenesis [BR:
aof03009
]
109840545
03016 Transfer RNA biogenesis [BR:
aof03016
]
109840545
Enzymes [BR:
aof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109840545
Messenger RNA biogenesis [BR:
aof03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
109840545
Spliceosome [BR:
aof03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
109840545
Complex C
U4/U6.U5 tri-SnRNP related factors
109840545
Ribosome biogenesis [BR:
aof03009
]
Eukaryotic type
Pre-60S particles
Helicases
109840545
Transfer RNA biogenesis [BR:
aof03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
109840545
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
nSTAND3
ATPase_2
Motif
Other DBs
NCBI-GeneID:
109840545
NCBI-ProteinID:
XP_020264813
LinkDB
All DBs
Position
5:18174086..18196931
Genome browser
AA seq
995 aa
AA seq
DB search
MEQAPNPGKRKLSEEDTEITKALSSGNASSESTPKRRTLSRTCVHEVAVPNGYVSSKDES
IHGTLANPTYTGNMAKCYEFELDPFQSVSVACLERNESVLVSAHTSAGKTAVAEYAIAMS
FRDKQRVIYTSPLKALSNQKYRELSHEFTDVGLMTGDVTLQPNASCLVMTTEILRGMLYR
GSEVIKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPQIKMVFLSATMSNATEFAEWICN
IHKQPCHVVYTDFRPTPLQHYVFPMGGSGLYLVVDENEQFKEDNFMKLQETFSRQKNQAE
GNRSGGSKAAGRIARGGTAHAGSDIYKIVKMIMERQFQPVIIFSFSRRECEQHAMSMAKL
DFNLPEEKEIVEEVFSKAILCLSEEDRALPAIELMLPLLQRGIAVHHSGLLPIVKELVEL
LFQEGLVKALFATETFAMGLNMPAKTVVFTSVKKWDGEGNRLIGSGEYIQMSGRAGRRGK
DERGVCVIMIDEKMEMNVLKDMILGKPAPLVSTFRLSYYSILNLMSRAEGQFTAEHVIKH
SFHQFQYEKSLPDMGERISKLESEAALLDSTGEAELAEYHTLGLSLGQLETKIMSEITRP
ERVLYYLVPGRLIKIRDGGTDWGWGVVVNVVKKPSAGGASSRGSNYIIDTLLHCSLGVSE
NGSRSKPCPPRPGEKGEMHVVPVPLSLLSGLSSIRIAVPSDLRPAEARQTVLLAVQELGN
RYPVGLPKLHPVKDMGIQDSEVVTLVQKIEELEHKLFAHPLHKSGQTEQQFKWFQRKAEV
NDEIQQLKLKMRDSQLQKFREELKNRSRVLKMLGHIDAEGVVLLKGRAACLIDTGDELLV
TELMFNGTFNDLDHHQVAALASCFIPGDKSNEQVHLRNELAKPLQQLQDSARRIAEIQRE
CKLDVNVDEYVESTVRPYLMDVIYCWSKGATFAEVIEMTDIFEGSIIRLARRLDEFLNQL
RGAAHAVGEATLEKKFEAASDSLRRGIMFANSLYL
NT seq
2988 nt
NT seq
+upstream
nt +downstream
nt
atggaacaagctccaaatccaggcaagcggaaactgtctgaagaagatacagagatcacg
aaagcactctccagtgggaatgcaagttctgaatctactccaaagcgtcgaactctatcc
cggacttgtgttcatgaggttgctgttcccaatggctatgtatcttcaaaagatgaatct
atccatggaacccttgcgaatcccacctacactggtaacatggctaaatgttatgaattt
gagctagaccctttccagagtgtctcagttgcttgcttggagaggaatgaatctgtcttg
gtctcagcacacacttcagctgggaagactgctgttgctgagtatgccattgcaatgtcc
tttagagacaagcagagggttatctatacctcacctctgaaggcattgagtaatcagaag
tatagagagctaagtcacgagtttacagatgttgggttgatgactggagacgtcaccctc
caaccaaatgccagctgcttggtcatgacgacagagattctcagagggatgctgtatagg
ggttctgaagtgataaaggaggtagcatgggttatctttgatgagattcactacatgaag
gatcgtgaaaggggggtggtctgggaagagagcataatattcttgcctccgcaaattaag
atggtttttctttctgcaaccatgtcaaatgctacagaatttgctgagtggatatgtaat
attcacaagcagccttgtcatgttgtctacacagacttcaggcccacacctttgcaacat
tatgtttttcccatgggtgggtcaggtttgtaccttgtcgtggatgagaatgagcagttt
aaagaggataattttatgaagctgcaggagacattttcaaggcaaaagaaccaggcagag
ggcaataggagtggtggttcaaaagctgctggtcggattgcgaggggtggtacagctcat
gcaggttcagacatatacaagattgtgaagatgattatggaacgtcaatttcagccggtt
attattttcagctttagtagaagagagtgtgaacaacatgctatgtccatggccaaactt
gactttaatctgccagaggaaaaggaaattgttgaggaggttttcagtaaggcaatactg
tgcttgagtgaggaagacagagctttgcctgccattgagttaatgctccctctccttcaa
cgaggtattgcagtgcatcattcaggacttctgcccattgttaaggaactggtggagctt
ctctttcaggagggccttgtaaaagctctttttgctactgaaacatttgccatgggcttg
aacatgcctgcgaaaactgttgtttttacatcagttaagaaatgggatggtgaaggcaat
cgtctcattggatctggagaatatatccagatgagcggaagagctggtcgtcgtggtaaa
gatgagcgtggcgtttgtgtgataatgattgatgagaagatggaaatgaatgttctcaaa
gacatgattttgggcaagccagctcccttggtcagtactttcagactgagctattattca
attctaaatctaatgagccgagcagagggtcaatttactgccgagcatgtcatcaaacat
tcattccaccaatttcagtacgaaaagtcgctgcctgatatgggagaaaggatctcaaag
ctggaatctgaagctgctttgctcgattctactggagaggctgaactcgccgagtatcat
accctaggactaagtttaggtcagcttgaaacgaagatcatgtctgagatcactagacct
gaaagggttctgtactatttggttcctggtaggctgattaagatcagggatggtggaact
gattggggttggggagtagtagtaaatgttgtgaaaaaaccatcagcaggaggcgcttct
tctcgtggttccaattacataattgataccttgctacactgttctctgggtgtaagtgaa
aatggttctcgctcaaagccatgcccacctcgtcctggtgaaaagggcgaaatgcacgtg
gtccctgtaccattgtctttattatctggtctcagtagtattagaattgcagttccttct
gaccttcgacctgcagaggcacgacaaactgtactccttgcagtgcaggaattgggaaat
cgttatccagtaggccttccaaagctacatccagtgaaggacatgggcatccaagattca
gaagttgttaccttggttcagaaaattgaagaacttgagcataaattatttgctcaccca
ttgcataagtctggtcaaacagagcagcaattcaaatggtttcaaagaaaagctgaggtg
aatgatgaaattcagcagctcaagttaaagatgagggactcacagctacaaaaatttcgc
gaggaactgaaaaatcgttcacgagttctgaaaatgctgggtcatattgatgctgaaggt
gttgtccttctaaagggacgtgctgcctgtctgatagatacaggggatgaactgcttgtc
acagagctaatgtttaatggcacatttaatgatcttgatcaccatcaagtagctgctctt
gctagctgtttcatacctggtgataaatcaaatgagcaagtccatttgagaaatgaactt
gcgaaacctttacaacagcttcaggatagtgcaagaagaattgcagagatacaacgtgag
tgcaaattggatgtaaatgtagatgaatatgtggaatcaacagtgaggccatacttgatg
gatgttatatattgttggtcaaagggggcaacatttgcagaggtgattgaaatgactgat
atttttgagggaagcatcatacgccttgcaagaaggctggatgaatttctgaaccagttg
cgtggtgctgcacatgctgttggagaagctactctggagaaaaagtttgaagcagccagt
gatagcctccgacgagggatcatgtttgccaactccttgtatttgtga
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