Asparagus officinalis (garden asparagus): 109840553
Help
Entry
109840553 CDS
T05243
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 14-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109840553
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aof03041
]
109840553
03009 Ribosome biogenesis [BR:
aof03009
]
109840553
Enzymes [BR:
aof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
109840553
Spliceosome [BR:
aof03041
]
Complex A
U1 snRNP components
U1 related factors
109840553
Complex B
109840553
Ribosome biogenesis [BR:
aof03009
]
Eukaryotic type
Pre-60S particles
Helicases
109840553
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Cas3-like_C_2
DNA_pol3_finger
Motif
Other DBs
NCBI-GeneID:
109840553
NCBI-ProteinID:
XP_020264830
LinkDB
All DBs
Position
5:107001693..107013048
Genome browser
AA seq
740 aa
AA seq
DB search
MPAASSNGSGPRYAPEDPTLPAPWKGLVDGSTGYLYYWNPVTNVTQYEKPVKDKITGPPA
PAKPASVSVSSSVHRGESYEEDGRSRSNQYQVGRLSGSSTRAHGSSDGGGLSAEAYRRKH
EITIIGDDVPPPYMTFEQTSFPSEILREVQRAGFASPTPIQAQSWPIALQSRDIVAVAKT
GSGKTLGYLLPGFIHLKRLNNNPRMGPTVLVLAPTRELATQIQDEAAKFGKSSGISCTCV
YGGAPKGPQLRDLDRGVDVVVATPGRLNDILEMRRVNLRQVSYLVLDEADRMLDMGFEPQ
IRKIVKEIPARRQTLMYTATWPKEVRKIAADLLVHPAQVNIGNIDELVANKSITQYVEVI
KPIEKQRRLEQILRSQERGSKVIIFCSTKRMCDQLARTLTRQFGAAAIHGDKNQTERDRV
LGDFRTGNSPILVATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAYT
FFSDQDSKYARELVKVLEGADQRVPPELREMVSYGGYGRSNGTGYGDSGYGGRGGDSGYG
GRGGRGVASSERSNDDHGVYRSWHDSFTGYDRDRDNKERIHIDERAHQESKPVSRVRSNS
CSPSPKRGPSGWGRNQSRSRSRSRSRSRSIDRYGKPTTENRHSPIRDQPSRRSPASYDDG
EIRDDQLHRSEIPSDDPAPYVDNERREASPSPISWHQKFQKPRPSNDEPVRPQRSATGGD
EAEEGMIMPEEEEGMIHPDE
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atgcctgctgcttcttcgaatgggagcgggccgaggtacgcccctgaggaccccacgctg
ccggcgccctggaagggtttggttgatgggagcactggctatctttattactggaaccct
gtcaccaatgtcacgcagtacgagaagccggtcaaagataagattacgggcccgccagct
ccggcgaagccggcctcggtgtcggtgagctcctcggttcatcgtggggagtcttacgag
gaggatggacgatcaagaagcaatcagtatcaagttggtcgacttagcggctcatccacg
agagctcatggatcttcagatggtggaggcttatccgcagaagcctatcgtcgcaagcat
gaaataacaatcattggggatgatgttccacctccatacatgacttttgagcagaccagt
tttccctcagagattctcagagaggtacagcgagcaggcttcgcctctcctactccaatc
caggcccagtcatggcccattgctttgcagagtcgcgatattgtggccgttgctaaaact
ggttcagggaaaacattggggtaccttcttccaggcttcattcatcttaagcgcctcaac
aacaatccgaggatgggcccaacagttttggtactggctccaacaagggagctggctacg
cagatacaagatgaagctgcgaagttcgggaagtcctctggaatttcatgcacgtgtgta
tatggaggtgctccaaagggaccccagttgagagacttagatcgaggggtggatgttgta
gttgcaacccctggaaggttgaatgacattttagagatgaggagagtaaacctccggcaa
gtttcatatctggttcttgatgaggctgatcgtatgctggacatgggatttgagcctcag
atacggaaaattgttaaagagataccagctcgccgtcagacacttatgtacactgctaca
tggccaaaagaagttcgtaaaattgctgcagatttacttgttcatcctgcccaagttaac
attggtaatattgatgagcttgttgccaataaatctatcacccagtatgtagaagtgata
aaacctattgagaaacaaagaaggttggaacagattctacgatctcaagagcgaggctcc
aaagtcataatattctgctcaacaaagaggatgtgcgatcagttagcaaggactctcact
cgtcagtttggtgctgctgctattcatggtgataagaatcagactgagagggatagggtt
ttgggtgattttcgaactggaaattctccaattcttgtagctactgatgttgctgctcga
ggcttggacataaaggatatcagggttgtcatcaactatgacttcccaactggtgtagag
gactatgttcatcgaattgggaggacaggtagggcaggtgccactggagtggcctataca
tttttcagtgatcaggattcgaagtatgctcgcgagcttgtcaaagttttggaaggggca
gatcaacgagttcctcctgagctacgtgaaatggtatcatatggtgggtatggtcgctcc
aacggaacgggttatggtgattcaggctatggtgggaggggtggtgattcaggctatggt
gggaggggtggacgtggagtggcttcttcagagagatcaaatgacgatcatggtgtttat
cgcagttggcatgattcttttaccggctatgatcgtgaccgtgacaataaagaaagaatt
catatagatgaaagagcacatcaagagtccaagcccgtctctagagtccggagcaatagc
tgcagcccgagtccgaaaagaggaccttctgggtggggccggaatcagagcaggagcagg
agcaggagcaggagtcggagcaggagcattgaccggtatggaaagccaacaacagaaaac
agacactcacccattcgtgatcaaccttctcgtcgttcacctgcatcgtatgatgatgga
gagatcagagatgatcaacttcatcgctcagaaattccaagtgacgatcctgccccttat
gttgataacgaacggcgagaggcttctcctagtcctattagttggcatcagaaatttcag
aagcctaggccatcaaatgatgaacctgttcgaccacagagatcagccactggtggtgat
gaagcagaggaagggatgattatgccggaagaggaagaaggaatgatacatccggatgaa
tga
DBGET
integrated database retrieval system
