Asparagus officinalis (garden asparagus): 109840815
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Entry
109840815 CDS
T05243
Name
(RefSeq) LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase 56-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03013
Nucleocytoplasmic transport
aof03015
mRNA surveillance pathway
aof03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109840815
09122 Translation
03013 Nucleocytoplasmic transport
109840815
03015 mRNA surveillance pathway
109840815
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aof03019
]
109840815
03041 Spliceosome [BR:
aof03041
]
109840815
Enzymes [BR:
aof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
109840815
Messenger RNA biogenesis [BR:
aof03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
109840815
Spliceosome [BR:
aof03041
]
Complex C
Other components
EJC/TREX
109840815
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
109840815
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
109840815
NCBI-ProteinID:
XP_020265180
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All DBs
Position
5:115460553..115466993
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AA seq
425 aa
AA seq
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MGEARDNDAYEEELLDYDEEEDKALDSVGAKANGEAAKKGYVGIHSSGXXXXXXXLRAIV
DSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVSALVLCH
TRELAYQICHEFERFSTYLPDIKVAVFYGGVHISKHKDILKNECPHIVVGTPGRILALTR
DKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKLTPHDKQVMMFSATLSKEIRPVCKR
FMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAA
ELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIVVN
YDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDVDILNKVQARFEVDIKELPEQIDTS
TYMPS
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atgggcgaagcaagggataacgatgcttacgaggaggagctccttgattacgacgaggaa
gaagacaaggcccttgattcagttggggccaaggctaatggtgaagcggcaaagaaggga
tatgtcgggatccacagctcgggcnttnnnnnnnnnnnnnnnnntctccgggcaatagta
gattctgggtttgagcatccctctgaagtccaacatgagtgcattcctcaagccatcttg
ggaatggatgtcatctgccaagctaaatctgggatgggaaagactgctgtctttgttctg
tcaactcttcagcagattgatcctgttgccggccaagtttctgctctagttttatgccac
acaagagaattggcttaccagatatgtcatgaatttgagcgtttcagcacatacttgcct
gacatcaaggttgcagtgttctatggaggtgttcatatttcaaagcacaaggatatactt
aaaaatgagtgcccccacattgttgttgggacgccaggaaggattctggcactaaccaga
gataaagacctctccctcaagaatgttaggcactttatccttgatgaatgtgataagatg
cttgagtcacttgacatgcggagagatgtgcaggagatattcaaactgactccccatgat
aaacaagtcatgatgttttcagcgacacttagcaaggaaattcgccctgtttgcaagcgt
tttatgcaagatccaatggaaatatatgtggacgatgaggcaaagcttaccctgcatggg
ctagtacagcattacatcaaacttagcgagttggaaaagaaccgcaagttgaacgacctt
ctggatgctttggatttcaaccaagttgtgatatttgtcaagagtgttagcagagcagca
gagctgaacaaactgctagttgaatgcaattttccatctatctgcatccactctggaatg
tcacaggaggaaaggttgacaaggtataaaagtttcaaggaaggacacaaaagaattctt
gtagctacggatctggtaggcagaggaatagatatcgagcgtgtcaacatagttgttaat
tacgacatgcctgattctgcagacacttacttacacagggttgggcgtgctggtcgtttc
gggactaaagggttggccatcacatttgtctcatctgcttctgatgttgatattcttaat
aaggttcaagcaaggtttgaggttgacatcaaagagttgcctgagcaaattgacacttca
acatacatgccctcttga
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