Asparagus officinalis (garden asparagus): 109841133
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Entry
109841133 CDS
T05243
Name
(RefSeq) CCR4-NOT transcription complex subunit 10-like
KO
K12607
CCR4-NOT transcription complex subunit 10
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109841133
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aof03019
]
109841133
Messenger RNA biogenesis [BR:
aof03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
109841133
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_14
ANAPC3
TPR_19
ARM_TT21
TPR_11
Motif
Other DBs
NCBI-GeneID:
109841133
NCBI-ProteinID:
XP_020265593
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All DBs
Position
5:complement(125059934..125073209)
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AA seq
814 aa
AA seq
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MDGRDSSPAAGEDERSSPVTHALAKEAEALFSSGKFSECVEVLNQLLAKKEGDPKVLHNL
AVAEYFRDGCTDPRKLLDVLNKVKKRSEELSHSAGEQVDSAGNLGSTTSGSKGSSNNLHQ
LSATDASSAYADEFDTSIITLNAAIVLYHLHEYAHALSILEPLYQNIDPIDETTALHVCL
LLLDVALASQDAEKASDVIQYLEKCFGVGYTMNQSDNGNTTQQQSLNQGLKASTMSSTSM
TDGTSSDSSANINENSLSGTLSDDALEYESLYSTLDGSGQNLGRRSVNDVTKASAHRAAP
ATDLKLKMHLYKVRLLLLTRNIKAAKREVKLAMNMARGRDSSTELILKSQLEYARGNHRK
AIKLLMTSSNRTEPEILSIFNNNFGCVHYQLRSHHTSGLLFSKALKSSSSLRSEKPLKLS
TFSQDKSLLIIYNCGIQHLACGKPLVAAKCFGKSSLIFYNRPLLWLRLAECCLMALEKGL
LGSKGEDIRVHVAGSGRWRQLVIDDLKSTDGYSNSENTNGCKLSLPFARYCLQNVLILLN
KTEQKAIKSGDSVTALNQEESDQVKSGKNSTHKNASTGDSKANGDSKENKGTSSSSSILQ
SSVSAYEDMRREENHMIRQAVLGALAYVELCLENPLKALSFSKSLLDLPECSKIYVFLGH
TYASEALCWLNRSKEAAEYLSVYLTDGNNVELPYGNEDREKWFSKRGANDFEDSNSSLPS
KNNAEDTQSLMFLKPEEARGIVFANFSAMFAIQRDLEKASRFASEALALVPKHPKALLAI
AYVDLLQGKTKEAISKLKQFNHVRYLSTDVSLSS
NT seq
2445 nt
NT seq
+upstream
nt +downstream
nt
atggacggtcgcgattcgtcgccggcggcgggggaggacgagcggagttcgccggtgact
catgcgctggcgaaggaggcggaggcgttgttttctagtggcaagttctctgagtgcgtg
gaggttttgaatcagttgttggcgaagaaggaaggagatccgaaggttcttcataacctt
gctgtagctgaatacttccgtgatggttgtactgatccaaggaaactccttgatgtgctc
aataaggttaagaaaagaagtgaagagctttcccattcagcaggtgagcaagtggacagt
gcaggcaatcttggtagcactacttctggatctaaagggagtagtaataacctacatcag
ctatctgctacggatgccagcagtgcatatgcagatgagtttgacacttctattatcaca
ctgaacgctgcaattgtactttatcatctgcatgaatatgcacatgcattgtcaattttg
gaaccattatatcaaaacattgatcccatagacgagacaacagctcttcatgtctgcctt
cttttgttggatgttgcattagcttctcaagatgcggagaaagcttcagatgtgatccag
tacctggaaaaatgttttggtgttggctacaccatgaaccagagtgataatggaaacaca
actcaacagcaatctctgaatcagggtctgaaagcatcgacaatgagcagtacctccatg
acagatgggaccagttctgattcgagtgccaacatcaacgagaactctctctcaggaaca
ttatcagatgatgccctagagtatgagagtttgtattcaacactggatggtagcggtcag
aacctgggccgccgctcagtaaatgatgtcacaaaagcatcagctcatcgtgctgctcct
gctactgatctaaaactcaaaatgcatctctacaaggtccggctacttcttctcactagg
aatataaaggctgcaaaacgagaagttaagcttgctatgaacatggcaagaggaagagat
tcatcgaccgagctaatcttgaagtctcagctagaatatgcccgtggtaaccatcggaag
gccattaagcttctgatgacatccagcaacagaacagaaccagaaattcttagtatcttt
aataacaattttggctgcgttcattaccagctaaggagtcaccacacttcaggccttcta
ttttccaaggcactgaaaagcagctcgtcacttcgttctgagaaacctctgaagctttct
acattttcgcaggacaaatcgcttctcatcatatacaactgtgggattcagcacctggcc
tgtggaaaaccattggttgcagctaagtgttttggtaaatccagtttgattttctacaac
cggcctctcctgtggcttcgtcttgctgaatgctgtctcatggctttagagaaggggctt
ttgggatcaaagggtgaagacataagagttcatgttgctggttcaggcagatggagacaa
ttagttatcgatgatttgaagtcaacagatggatattctaactcagaaaataccaatgga
tgcaagctctcccttccatttgctcgttattgtctgcaaaatgtgttaatcttattgaac
aaaactgagcagaaagcaattaaatcaggtgattcggtcactgccttgaatcaggaggaa
tctgatcaggtaaaatccggcaagaattcaacccacaagaatgcatcgacaggagactca
aaagcaaatggagattcaaaagaaaacaagggtacttcgagttcatcctccatattgcag
agctctgtttctgcatatgaggacatgaggagagaagagaatcacatgattaggcaagca
gttcttggagccctagcttacgttgagttatgcttagaaaaccctttgaaagctctttct
ttttcaaaatcactcctcgatcttccagaatgttccaaaatttatgtctttctcggtcac
acttatgcctctgaagcactttgttggctgaaccgatctaaagaagcagcagaatattta
tcagtatacctcacagatggcaacaatgtcgaattgccttatggtaatgaggatagagaa
aagtggttctcaaagagaggggctaatgattttgaagattcaaacagttctttgccttct
aaaaataatgccgaagatacccagagcttgatgttcttgaagcctgaggaggctcgtggg
attgtttttgctaatttctcagcaatgtttgcaattcaaagagatcttgaaaaggctagc
agatttgcttctgaggctctagctttagttcctaagcatccaaaagctttgcttgcaata
gcatatgtcgatctcttacaagggaagacaaaagaggctatttccaagttgaagcagttt
aaccatgtgagatatctttcaactgatgtatcgttgagcagctga
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