Asparagus officinalis (garden asparagus): 109841198
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Entry
109841198 CDS
T05243
Name
(RefSeq) endoribonuclease Dicer homolog 4-like isoform X1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
aof
Asparagus officinalis (garden asparagus)
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
aof03036
]
109841198
Chromosome and associated proteins [BR:
aof03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
109841198
microRNA pathway
RISC loading complex
109841198
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
DEAD
Helicase_C
ResIII
DND1_DSRM
dsrm
PAZ
SWI2_SNF2
Cas3-like_C_2
Dicer_dsRBD
tRNA_int_end_N2
Motif
Other DBs
NCBI-GeneID:
109841198
NCBI-ProteinID:
XP_020265695
LinkDB
All DBs
Position
5:126689820..126725549
Genome browser
AA seq
1640 aa
AA seq
DB search
MESSSQHPRNPIKDPRTIARKYQLDLCKRAVDENIIVYLGTGCGKTHIAVLLMYELGHLI
RKPSSSVCVFLAPTVPLVRQQAMVIENCTDFKVQSYFGNGKHLKDHHEWNKEIEQIEVLV
MTPQILLHNLRHCFIRMELIALLIFDECHHAQAQKRHPYAQIMKEFYKMDALRSPRIFGM
TASPIIGKGGSTQTNYTKCINSLENLLDAKMCSIDDNLELESFVASPEIKVYFYDPVEHN
ESSLIMVYQRELDQIRNKCTCMLRENISDLKDRQKLMKSVLKIHEKVVFCLENLGLYAAI
QAVQILLTSDGLDIPDTKQNDDDSNTYLVNQYLNNARSVLCCKILDDNMGSDSFVPETLE
EPFFLKKLSALIGILSSSRLKENMKCIIFVKRIIVARTLAHILGSLKVLDYWKCEFLVGF
HSGLRNMSRSKVNTIVEKFRSGEVNLLVATNVAEEGLDIQTCCLVVRFDLPETVASFIQS
RGRARMQKSEFVFLVERGNLRDEQLLHDFMSGENFMNKEVIARTSGETFNNLEETIYKVD
STGASISTGCSISLLYRYCDKLPRDIYFDPLPKFFFIDDIHGTICRVILPSNAPVRQVDS
LPCSSKDEAKRAACLKACIELHKKGALTNYLLPGLDDGKRKILATNCSESQNSDDECLRE
ELHEMLVPAVLRMPWSTTDDVDFYFYYIKCVPIPDDRNYRKFGLFVKVPIPDEAETMEVD
LHLAHGRIVKTGFVSMGKITLDREEVLLAESFQEMFLKVILDRSDFYHDFVSLGENAAIS
PPSSTFYLLLPVKKKKCEENMVVDWETVKRCLSSPVFSHSTVSHARDLCDVSNSLKLYNG
TFAENDVFDSVVFTQHNKLFYFIYGILHEKNALSKHRNSTSYAEHYMDKFGIQLSYPEQP
LLKAKQVFSLHNLLHNRVQEGTDTRELLEHFVELPPEMCLLKIFGFSKDIGSTLSLLPSL
LHRLENLLVAIELKELLSASFPDATKVRAECILEALTAEKCMERISLERFEVLGDSFLKY
IVGRHSFLSYQGLDEGQLTKKRSSMVNNSHLYELAIQKNLQVYIRDELFLPSNFFALGRP
CKVVCDVDIQSSIHHQQGNGSTVNAKEASNVKCTRSHRWIHRKTIADVVEALVGVFLVES
GFRAAIAFLQWIGMQVDFEVCDFYRVLQESRSNLELSKSIDVDALEKLLGYRFKHRGLLL
QAFVHPSYNKHSGGCYQKLEFLGDAVLDYMITSYIYSVYPDLKPGQITDLRSITVNNNSL
AHIAVWKFFHEYLIKESDSLSRAIKKFKDFIQTSDAERELTEEPACPKVLGDVVESSIGA
VLLDAGFDLNLVWNIMLNLLEPILRFSSLQINPVRELRELCQSYSFELGLPDPVKQKEGY
SVWVEIDVKGKHLTYSAVNNNSKAARRTAAQEALCKLKALGFKHKSKSLEEILSSTRKKL
PLLIGFDEDPIVVENFDCNSISIPDEDPIVESFDCNSISIPLEKLTVHEAEETSSQWSLP
TIDVNNDFQKLLSVASRSPQRTKQEKYEQVSWQPKRPNGLMENSHQHEMNGGQSNKSARS
QVFEICAGNYWKPPLFECCKDEGPCHLKMFTYKVTIEIDGVNSTLLECYNEPKSQKKAAQ
EHAAAGALWYLKHLGYTAKL
NT seq
4923 nt
NT seq
+upstream
nt +downstream
nt
atggagtcgagctctcagcatcctcggaatccaatcaaagatccaaggaccatcgccagg
aagtatcagctcgatctttgcaagagagcggttgatgagaacatcatcgtctatctgggg
acggggtgtgggaagactcacatcgcagttctcttgatgtacgagctcggccacttgatt
cgaaagcccagcagcagcgtctgtgtctttctcgctcccactgtgccgctcgttcgtcag
caagcaatggtcatagagaactgcactgatttcaaagtccaaagctattttggcaatggt
aaacatttgaaggatcatcatgaatggaacaaggagattgaacaaatagaggttcttgtt
atgacccctcaaatacttctacacaatttaagacattgtttcatcaggatggaactaatt
gcacttttgatatttgatgaatgccatcatgcacaagcgcaaaagaggcatccttatgct
cagattatgaaggaattttacaaaatggatgccctaagaagtcctcgtatatttggcatg
actgcttctccaatcattgggaaaggtggatctactcaaacaaactataccaaatgcatc
aacagtcttgagaatttacttgatgcaaagatgtgttcaattgatgacaatctagaactt
gaaagttttgttgcttctccggaaataaaagtctacttctatgatcctgtggaacataat
gaatcaagcttgataatggtttatcaaagagaacttgaccagataagaaacaagtgcacg
tgcatgctacgagaaaatatttctgatttgaaagatcgtcagaagttgatgaagtcggtt
ttgaagatacatgaaaaagttgttttttgtctagaaaatcttggtctttatgcagcgata
caagctgttcaaattcttttgacttctgatggattggacattccagatacaaagcaaaac
gatgatgacagcaacacttacctagtaaatcaatatttgaataatgctcgctcggtttta
tgctgcaagatattagacgacaatatgggttcagattcgtttgttccggagacattagaa
gaaccatttttcttaaaaaaattgtcagctctgattgggatcctttctagctccaggttg
aaagagaacatgaagtgtataatctttgtgaagcgaataattgttgcgagaacattagcg
cacattcttgggagcttaaaagtgctagattattggaaatgtgaatttcttgtgggtttt
cattctggattgaggaatatgtcacgcagcaaggttaatacaatagttgaaaagtttcgt
tctggagaggtgaatcttttggttgctaccaatgtagctgaagaaggtcttgatattcag
acttgctgccttgtagtgcggtttgatctgccagaaacagtggctagttttatacagtca
agaggtcgtgctcgcatgcagaaatctgaatttgtttttcttgtcgaaagaggcaacctg
cgtgatgagcagttactgcatgattttatgtctggagaaaatttcatgaataaagaagtc
atcgccagaacatccggtgagacctttaataatttggaggagacaatttataaagttgac
agcactggtgcttctatcagcactggttgcagcatttcgcttctttatagatactgtgac
aaacttcctcgagatatatattttgatcctttgccaaagttctttttcatagatgatata
catggaacaatctgccgagtaattcttccctcaaatgctcctgtccgtcaggtggatagt
ttgccctgctcctcaaaagatgaagctaagagagcagcttgtttgaaagcatgtatcgag
ctgcataaaaagggtgctttgaccaattatcttctgcctggtctggatgatggaaagagg
aaaatactagctacaaattgctcagagagtcaaaacagcgatgatgaatgtctgagagaa
gaacttcatgagatgctagtccctgctgttcttagaatgccatggtccactacagatgat
gtcgatttttatttttattatataaagtgtgtccccataccagatgatagaaactatcga
aaatttggtctttttgttaaagttcctattccggatgaagctgagactatggaagttgat
ttacatcttgctcatggcaggattgttaagacagggtttgtaagtatggggaagatcaca
cttgacagagaagaggttttactggcagagagttttcaggaaatgtttctaaaggtcatc
ctcgatagatctgacttttaccatgactttgtttctttaggtgagaatgctgcaattagt
ccgccttcgtcgacgttttacctgctacttccagtcaaaaagaaaaaatgtgaggaaaat
atggttgttgattgggaaactgtaaaacgctgcttatcatcaccggtttttagccattca
actgtttctcatgcaagagatctttgtgatgttagcaacagtttaaaactttataatggc
acgtttgctgagaatgatgtattcgacagtgtggtgttcactcaacataataaactattc
tattttatctatggaattctccatgagaaaaatgctctcagcaaacacaggaattctaca
agctatgcagaacactacatggacaagtttggcattcagctatcctatcctgagcagcca
ttgctgaaggcaaagcaggttttttctttgcacaacttgctgcacaatcgggtacaagag
ggtacagatactcgtgaactactggagcactttgtggagttgcctcctgaaatgtgtttg
ctaaaaatatttggcttttcaaaagatattggaagtactttgtctttattgccttctcta
ttgcatcggctagaaaatctactcgtggctattgagctgaaggagcttttgtcagcatct
tttcctgacgccactaaagtccgagctgaatgtatcctagaagcattaacagctgagaaa
tgtatggaacgaatttccctcgaaaggtttgaagtgctgggtgattcatttctgaagtat
atagttggccgtcacagtttcctttcatatcaaggcctagacgagggacaactcaccaaa
aagcgttctagtatggtgaataattcacatttatatgagttagctattcagaagaatttg
caggtgtatatacgtgatgaattatttctcccatcaaatttctttgcactcggccggcca
tgtaaagtagtttgtgatgtagatatacaatcaagtatacatcatcaacaaggaaatggt
tccacagtaaacgcaaaagaagccagtaacgtgaaatgtactagatcacatcggtggatt
cacaggaaaactattgctgatgttgtggaagctcttgttggagtatttctagttgagagt
gggttcagagctgcaattgcatttctccaatggattggaatgcaagttgattttgaagtc
tgcgatttttacagagttcttcaagaaagcaggagcaacttggaactcagtaaaagcata
gatgttgatgcacttgagaagctattaggatatagatttaagcatagaggtcttcttcta
caggcttttgttcatccttcttacaataagcactcaggtggatgctatcagaaactggag
tttcttggagatgccgtcttggattatatgataacatcgtacatctattcagtttatcca
gacctaaaaccagggcaaataactgatttgcgatcaataactgtcaacaacaattcttta
gctcatatagcagtttggaaattctttcatgagtatcttataaaagaatctgatagtctc
agtcgagcaataaaaaagttcaaggattttattcaaacatcagatgcagaaagagaacta
actgaggaaccagcatgcccaaaggtgcttggtgatgttgttgaatcatcaattggtgct
gtacttctggatgcaggatttgacttaaacttagtttggaacattatgctcaatctgttg
gaacctattttaaggttttctagcttgcagatcaaccctgtaagagaactccgtgaactc
tgtcagtcttatagttttgagctgggattaccggatcctgtgaaacaaaaggaaggctat
tcagtctgggtagaaattgatgtcaaagggaagcatttgacttacagtgctgtcaacaac
aactcaaaagctgccagaagaaccgctgcacaagaagcactttgtaagcttaaggctctt
ggtttcaagcataaaagtaagtcgctagaagaaattttaagctcaactcggaagaagcta
cccttgctgattggatttgatgaagatcctatagtagtagagaacttcgactgtaactca
atctcgattcctgatgaagatcctatagtagagagcttcgactgtaactcaatctcgatt
ccactagagaagttaacagtccatgaagcagaagagacttcatctcaatggagtctcccc
acaatagatgttaacaatgactttcaaaagctgctctctgttgcatcaaggtcaccacaa
agaacaaagcaagagaagtatgaacaagtaagctggcagccgaagaggccgaatggactg
atggagaacagtcatcaacatgagatgaatggtggtcagagtaataaatcagcaaggtca
caagtgtttgaaatatgtgctgggaactattggaagcctcctttgtttgagtgttgtaaa
gatgaaggaccatgccatctaaaaatgtttacttataaggttactattgaaattgatgga
gtaaattctacactcttggagtgctataacgaacccaagtcgcagaaaaaggctgcacaa
gagcatgcagccgcaggagcactgtggtatcttaagcatcttggatatacggcaaagctc
taa
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