Asparagus officinalis (garden asparagus): 109841223
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Entry
109841223 CDS
T05243
Name
(RefSeq) probable CCR4-associated factor 1 homolog 7
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109841223
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aof03019
]
109841223
Messenger RNA biogenesis [BR:
aof03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109841223
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
109841223
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
109841223
NCBI-ProteinID:
XP_020265719
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Position
5:complement(127277610..127282824)
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AA seq
266 aa
AA seq
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MSSILPKPESIEIREVWSSNLDSEFALIRDIIDDYPYIAMDTEFPGVILRPVGPYKTTSD
YHYQALKFNVDLLKPIQLGLTFSDPDLNHRFVFQFNFREFDPQYDVFASDSIDLLRQSGI
DFEKNMEFGVDVVKFGELLMSSGVVLNDGVQWITFHSGYDFGYLLKILTCKSLPESQEGF
FDLIRTYFPRVYDIKHLMRFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTACAFRKL
KESFFNGSTERYAGVLYGLGVEKGSD
NT seq
801 nt
NT seq
+upstream
nt +downstream
nt
atgtcctcaatcctccccaaacccgaatccatcgagatccgcgaggtctggtcgtcgaac
ctcgactccgagttcgccctgatccgggacatcatcgacgactacccctacatcgccatg
gacacggagttccccggcgtcatcctccgccccgtcgggccctacaaaactacctccgat
taccactaccaagccctaaaattcaacgtcgacctcctcaagcccatccagttagggctc
actttctccgaccccgacctcaaccaccgcttcgtcttccagttcaatttccgcgagttc
gacccccagtacgacgtcttcgcctccgattccatcgacctccttcgccagtcggggatc
gacttcgagaagaacatggaattcggcgtcgacgttgtcaagttcggcgagctgctgatg
tcgtctggggtcgtgctcaacgatggggtccagtggattacgttccattcggggtacgat
ttcgggtatttgctgaagattttgacttgcaagagcctgcctgagagccaagaagggttc
tttgatttgattcggacgtatttcccgagggtttatgatattaagcatctcatgaggttt
tgtaatagcttgcacgggggtctgaataagttggcggagttgctggaggtggagagggtt
gggatttgtcatcaggctgggtctgatagcttgctgactgcttgtgcgtttaggaagctg
aaagagagtttctttaatgggtcgacggagaggtacgccggcgtgctgtatgggctcggt
gttgagaagggcagtgactga
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