KEGG   Asparagus officinalis (garden asparagus): 109841232
Entry
109841232         CDS       T05243                                 
Name
(RefSeq) transcription initiation factor TFIID subunit 5
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
aof  Asparagus officinalis (garden asparagus)
Pathway
aof03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:aof00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    109841232
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:aof03021]
    109841232
   03036 Chromosome and associated proteins [BR:aof03036]
    109841232
Transcription machinery [BR:aof03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     109841232
   Coactivators
    SAGA/TFTC/STAGA complex
     109841232
Chromosome and associated proteins [BR:aof03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     109841232
    STAGA complex
     109841232
    TFTC complex
     109841232
    SAGA complex
     109841232
    SLIK complex
     109841232
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_THOC3 WD40 Beta-prop_WDR3_1st WD40_Prp19 TFIID_NTD2 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_WDR3_2nd Beta-prop_CAF1B_HIR1 WD40_Gbeta EIF3I Beta-prop_TEP1_2nd Beta-prop_WDR36-Utp21_2nd Beta-prop_EML_2 WD40_MABP1-WDR62_2nd WDR55 Beta-prop_WDR90_POC16_2nd NBCH_WD40 ANAPC4_WD40 Beta-prop_EML Beta-prop_WDR36-Utp21_1st WD40_MABP1-WDR62_1st Beta-prop_IFT122_1st Beta-prop_TEP1_C Beta-prop_RIG_2nd Beta-prop_Aladin WDR90_beta-prop_4th Beta-prop_WDR75_1st Beta-prop_WDR19_1st Beta-prop_IFT140_1st Beta-prop_WDR41 Beta-prop_EIPR1 Beta-prop_VPS8 Beta-prop_SCAP Beta-prop_DCAF4 Ge1_WD40 Beta-prop_Vps41 Beta-prop_SPT8 WD40_RFWD3 Beta-prop_HPS5 Tricorn_2nd Beta-prop_WDR35_TULP_N Beta-prop_DCAF12 Beta-prop_RIG_1st Beta-prop_ACSF4 LisH Cytochrom_D1
Other DBs
NCBI-GeneID: 109841232
NCBI-ProteinID: XP_020265729
LinkDB
Position
5:complement(127555571..127590055)
AA seq 653 aa
MEDEDIEKTVLAYLKKKGFKQTELALQEEQNRISSSSLADPSRSKNGAARYHDGYNKLRS
WAYGSLDLYKHELLRVLYPVFIHCFMDLVAEGHMQEARTFFNTFREDHELMHLRDLQKLE
GILSPSHLEEMELARTLRQSKVNIKLCEYSYNLLLQYLQKTQALTMLGIINEHINFEVSS
GQPISITDDADVVALVGSSQDIAKQINQKEVRWGLLEDSVEERLERAFSDSEKAEGENKD
VDPEDNKKRSADGGKQSAPPKKLKKDKLVGAMGKNVRSETTTISTAPRVKPELTLPVISS
EVEQSILEDLRNRVQLSSLALPSVSFYTFINTHNGLNCSSISHDGSLVAGGFSDSSLKVW
DMSKIGQTTKTSNLQGENESAPSEHVLGSDEGRGSYTLFRGHAGPIYSATFSPFGDFLLS
SSSDSTIRLWSTKLNANLVSYKGHNYPVWDVQFSPMGQYFATASHDRTARLWSVERIQPL
RIMAGHLSDVDCVQWHVNCNYIATGSSDKTVRLWDVQSGECVRIFIGHRSMVLSLAMSPD
GRYMASGDEDGTIMMWDLSSGRCISPLTGHNSCVWTLAFSCEGTMLASGSADCTVKLWDV
TSSTKPTKADENKGSSANRLRLLKALPTKSTPVYNLRFSRRNLLFAAGALSKS
NT seq 1962 nt   +upstreamnt  +downstreamnt
atggaagacgaggacatcgagaagacggttctcgcttacctgaagaagaagggtttcaaa
cagaccgagctcgctcttcaggaagaacagaaccggatctcttcttcttcattggcggat
ccatcgagatcaaagaatggtgctgccagatatcatgatggttacaacaagctaaggtca
tgggcatatggttcgttggatttgtataagcatgaactgcttcgtgtgctttatccagtt
tttatacactgtttcatggatcttgtggcagaagggcacatgcaggaagctcggactttt
ttcaacacattccgcgaagaccatgaactaatgcatctgagagatctccagaaattggaa
ggcatcctttctccctcacatctggaggaaatggaattagctcgtactttgaggcagagc
aaagttaacataaagttatgtgagtactcgtacaatcttcttctgcaatatcttcaaaag
actcaggcgcttacgatgcttggaataatcaatgagcatatcaattttgaagtttcctct
gggcagcctatatccataactgatgatgcagatgttgtagctttagttggaagtagccag
gatatagctaagcaaataaaccagaaggaagtacggtgggggttgcttgaagattctgtt
gaagaacgtctggagagagcattctcagattctgaaaaggctgagggggaaaacaaagat
gtagatccagaagataacaagaagagatctgcagatggagggaaacaaagtgctcctcca
aaaaagttgaagaaggacaagcttgttggcgctatgggtaaaaatgtccgctcagagaca
actacaatatcgacggcaccacgagtgaaaccagaacttactttgcccgtaatatccagt
gaagtagagcaatctattcttgaggacctgaggaatcgcgtacaattgagtagcttggca
ttgccatctgtcagcttctataccttcattaacacacataacggattaaattgttcgtct
atatctcatgatgggtcactggttgctggtggattttctgactcatccctaaaggtctgg
gatatgtccaagattggccagacaactaaaacatctaatttgcagggagaaaatgaatct
gctccaagtgaacatgtgcttggatcagatgaggggagaggatcttacacattgttccga
ggccatgctggacctatttactccgctacgtttagtccttttggagattttcttttgtca
tcatcctctgactcaacaattcgattatggagcaccaagctgaatgcaaatctagtcagc
tacaaaggtcacaattatccagtgtgggatgtccaatttagtcctatgggacaatatttt
gctactgcttcacatgatcgtactgctaggctgtggtcagtagaaaggatccaaccactg
cggataatggctggtcatctatctgatgttgattgcgtacaatggcatgtaaactgcaac
tacattgctacgggatccagcgataaaacagtcagattatgggacgtgcaaagtggggaa
tgtgttcgcattttcattggtcacagaagtatggtgctctcattggcaatgtctcctgat
gggcggtacatggcttctggcgatgaagatggaaccatcatgatgtgggatctatccagt
gggcggtgtatttcgccattaacaggacataattcttgtgtgtggacacttgctttcagc
tgtgaagggacaatgcttgcatctgggtctgctgactgcactgtaaaactatgggatgtc
acttccagcaccaagccaacaaaggctgatgagaacaaaggaagcagtgctaacaggctc
aggctattgaaagctcttccaaccaaatcaactccagtttataacttaaggttttctcgt
agaaatcttttatttgcggctggtgcgctttcaaaaagctag

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