Asparagus officinalis (garden asparagus): 109841292
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Entry
109841292 CDS
T05243
Name
(RefSeq) ubiquitin receptor RAD23b
KO
K10839
UV excision repair protein RAD23
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03420
Nucleotide excision repair
aof04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
109841292
09124 Replication and repair
03420 Nucleotide excision repair
109841292
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03051 Proteasome [BR:
aof03051
]
109841292
03400 DNA repair and recombination proteins [BR:
aof03400
]
109841292
Proteasome [BR:
aof03051
]
Eukaryotic proteasome
Proteasome interacting proteins (PIPs)
UBL-UBA shuttle proteins
109841292
DNA repair and recombination proteins [BR:
aof03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
109841292
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Gene cluster
GFIT
Motif
Pfam:
UBA
XPC-binding
ubiquitin
UBA_7
Rad60-SLD
CUE
TECR_N
UBA_3
Ubiquitin_4
UBA_RAD5A
SOG2
Ubiquitin_2
Dsc3_N
Motif
Other DBs
NCBI-GeneID:
109841292
NCBI-ProteinID:
XP_020265804
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Position
5:complement(128615900..128627304)
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AA seq
366 aa
AA seq
DB search
MKLTVKTLKGTHFEIKVQPNDTIMAVKKNIEEVQGKDSYPWGQQLLIHNGKVLKDESTLE
ENKISEDGFLVVMLSKSKAPGTGGSSSAQPSATAVTPSQPPIQTSTQACPQTQPPTNPAT
TSERATTEAPSDAYDQAASNLAAGSNLDQIINQLMDMGSGNWDKDTVSRALRAAYNNPER
AVEYLYSGIPPAAEVAVPVAANTNEAAATGSSPQPGLPNSSPLNMFPQGAASLGAGNDGS
LDFLRNNPQFQMLRAMVQANPQILQPMLQELSKQNPQLLRMIQEHHAEFLQLINEPVEGA
EGDLFDQPDQEMPHTVRVTPEDQAAIARLEAMGFDRAQVIEAFLACDRNEELAANYLLEP
SGDDEV
NT seq
1101 nt
NT seq
+upstream
nt +downstream
nt
atgaagctaacagtgaagactttgaaggggacgcacttcgaaatcaaagtgcagcccaat
gatacgattatggctgtgaagaaaaatattgaggaagtacaagggaaagatagctaccca
tggggccaacaattattgatccataatgggaaggttttaaaggatgagagcacattggag
gagaacaaaatcagtgaagatggttttcttgttgttatgcttagtaagagcaaagctcca
ggtactggcgggtcttcttcggctcagccttcggcgactgctgtgaccccttctcagcct
cctattcagacgtctactcaggcttgcccacagactcagcctccaacaaatcctgcgact
acatctgagagagcaacaacagaagcaccttctgatgcatatgatcaagctgcgtctaat
ctagctgcaggcagtaatcttgaccagattattaatcagttgatggatatgggcagtggc
aactgggacaaggacactgtctcgcgtgcacttcgtgctgcttataacaatccagagcgt
gctgtagaatatctatattctggcataccaccagcagcagaagttgctgtcccagtagct
gcaaacacaaatgaagctgctgcaacagggtcatcccctcaacctggtttgccaaattcc
tcacctttaaatatgtttccgcagggggctgccagtctaggtgcgggtaatgacggatct
ctcgacttcctgagaaacaacccacagttccaaatgttgagagcaatggtccaagctaat
ccccaaattctacagcccatgcttcaagaactaagcaaacaaaacccgcagctgcttaga
atgattcaggagcatcatgctgagtttcttcagttaataaatgagcctgtagaaggcgct
gaaggggatctctttgatcagcctgatcaggagatgcctcacacagtcagggtgacacct
gaagaccaggctgctattgcacgacttgaggcaatgggatttgatcgtgcacaggtcatt
gaagcattcctagcatgtgacaggaatgaagaattggcggctaactatttattggaaccc
tcgggtgatgatgaagtttga
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