Asparagus officinalis (garden asparagus): 109841325
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Entry
109841325 CDS
T05243
Name
(RefSeq) protein ROOT INITIATION DEFECTIVE 3 isoform X1
KO
K14829
pre-rRNA-processing protein IPI3
Organism
aof
Asparagus officinalis (garden asparagus)
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
aof03009
]
109841325
Ribosome biogenesis [BR:
aof03009
]
Eukaryotic type
Pre-60S particles
5-FMC complex
109841325
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
Beta-prop_EML_2
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML
WDR55
NBCH_WD40
EIF3I
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_C
Beta-prop_HPS5
WDR90_beta-prop_4th
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_1st
Beta-prop_IFT140_1st
ANAPC4_WD40
Beta-prop_RIG_2nd
Beta-prop_Vps41
Beta-prop_IP5PC_F
Beta-prop_DCAF4
Beta-prop_WDR75_1st
Beta-prop_VPS8
Beta-prop_IFT122_1st
WDR54
Ge1_WD40
Beta-prop_SPT8
Beta-prop_WDR19_1st
Beta-prop_LRRK2
PEP5_VPS11_N
Beta-prop_SCAP
Beta-prop_BBS7
Beta-prop_DCAF12
PROPPIN
Motif
Other DBs
NCBI-GeneID:
109841325
NCBI-ProteinID:
XP_020265847
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Position
5:complement(129450970..129461778)
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AA seq
403 aa
AA seq
DB search
MELLVASSSVDSTIGSWDLRSGSEQLRYRSSASPPHGLLSVSRRFLASSQIRDSPKSSSS
QILFWSWDKPQIEVRSFPAEPIGPIVSNSDGAYIVGGGSSGSIYLWEVASGKLLNKWHAH
YRSVTCLTLSDDESLLISGSEDGCVRVWSLLMMFDDMGKEAARNLYKYSFSEHSLRVTDV
VCGHGLCNSIIISSSEDRTCKIWSLSEGILLRNIVFPSVIDAIAMDPGEHAFYAGGRDGR
IYIAALNAEPDPDNRYGMYIIGSLSDQSKAVTCLTFSTDGVTLVSGSEDGMVRVWDTKSQ
HVSRVLKHGKGPVSNVLIVRQPLRSGPQGFGNSQVSMSRKRSNLSLPPPLEKYIKTSDAE
AGNKSLAVLHPSWQDSHDSQYCSSYIMESQIKDLQEKHLPTQS
NT seq
1212 nt
NT seq
+upstream
nt +downstream
nt
atggagcttctcgtcgcgtcctcatccgtcgactccactatcggatcctgggaccttcga
tctggatccgaacagctccgataccgctcctccgcctcccctcctcacggcctcctctcc
gtttcccgccgtttcctcgcctcctctcaaatccgcgactcccccaaatcctcatcctct
cagattctcttttggtcttgggacaagccccaaattgaggtcagaagttttccagctgag
cctattgggccgattgtgtcgaattctgatggggcttatatcgttggtggtggctcttct
ggttccatttatttatgggaggtggcaagtggcaagctgctgaacaagtggcacgctcac
tacagatctgtcacttgccttacattgtctgatgacgagtctctattgatatctggatcg
gaggatggatgtgtcagagtgtggtcacttttgatgatgttcgatgacatggggaaggaa
gctgcaaggaatctctacaaatatagtttctcagaacacagtttacgtgttactgatgtt
gtttgtggtcatggactttgcaactctatcattatctcatcttctgaggaccgtacctgt
aagatttggagcttatctgaaggtatattattgaggaatattgtgtttccttccgtaatc
gatgcaattgcaatggaccctggagagcatgcattttatgctggtggtagagatggcagg
atatatattgctgcacttaatgctgaacctgatcctgacaaccgttatggaatgtacatc
attggatccttatctgaccaaagcaaagctgtgacttgcctaacatttagcacggatgga
gttactctggtttctggatcagaggatggtatggttcgggtttgggatactaaaagtcag
catgttagtcgtgtacttaagcatgggaaaggtcctgtcagtaatgtcctcatagttagg
caacctctccgctcaggtcctcaaggatttggaaattcccaagtatccatgtctagaaag
cgatcgaatttgtcactgccaccacctttggagaagtatataaagacatcagatgcagaa
gctggaaataaatctttagctgttcttcacccatcttggcaggattcgcatgatagccaa
tattgcagctcctatatcatggagagtcaaatcaaggaccttcaggaaaagcatcttccc
actcagagttga
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