Asparagus officinalis (garden asparagus): 109841329
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Entry
109841329 CDS
T05243
Name
(RefSeq) probable small nuclear ribonucleoprotein F isoform X1
KO
K11098
small nuclear ribonucleoprotein F
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109841329
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aof03019
]
109841329
03041 Spliceosome [BR:
aof03041
]
109841329
03032 DNA replication proteins [BR:
aof03032
]
109841329
Messenger RNA biogenesis [BR:
aof03019
]
Eukaryotic type
mRNA processing factors
3' end processing
U7-dependent histone pre-mRNA processing factors
109841329
Spliceosome [BR:
aof03041
]
Complex A
U1 snRNP components
Sm proteins
109841329
U2 snRNP components
109841329
Complex B
U1 snRNP components
109841329
U4/U6.U5 tri-snRNP components
109841329
Complex C
U2 snRNP components
109841329
DNA replication proteins [BR:
aof03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (fungi)
Sm core complex
109841329
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
DUF7688
Motif
Other DBs
NCBI-GeneID:
109841329
NCBI-ProteinID:
XP_020265853
LinkDB
All DBs
Position
5:129542392..129547649
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AA seq
94 aa
AA seq
DB search
MQSHPTVAGEAIPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYI
DGQFTGNLGEILIRCNNVLYLRGVPEDEEIEDAD
NT seq
285 nt
NT seq
+upstream
nt +downstream
nt
atgcaatcacatcctacagttgcaggagaggctatacctgttaaccccaaaccttttctg
aataacttgactggaaagcctgtgattgtgaaacttaaatgggggatggaatacaaaggc
tatcttgtttcagtcgattcctatatgaacttgcagcttgccaacactgaggaatacatc
gatgggcagttcactggaaaccttggggagatcctcatacgatgcaacaacgtcctgtac
ctccgaggcgttccagaggatgaagaaattgaagatgccgactga
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