Asparagus officinalis (garden asparagus): 109841422
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Entry
109841422 CDS
T05243
Name
(RefSeq) LOW QUALITY PROTEIN: splicing factor 3B subunit 3-like
KO
K12830
splicing factor 3B subunit 3
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109841422
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aof03021
]
109841422
03041 Spliceosome [BR:
aof03041
]
109841422
03036 Chromosome and associated proteins [BR:
aof03036
]
109841422
Transcription machinery [BR:
aof03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
109841422
Spliceosome [BR:
aof03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
109841422
Complex B
109841422
Complex C
U2 SnRNP specific factors
109841422
Chromosome and associated proteins [BR:
aof03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
109841422
TFTC complex
109841422
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_EML_2
Beta-prop_BBS7
WD40_MABP1-WDR62_2nd
Motif
Other DBs
NCBI-GeneID:
109841422
NCBI-ProteinID:
XP_020265976
LinkDB
All DBs
Position
5:complement(131404271..131433521)
Genome browser
AA seq
1221 aa
AA seq
DB search
MHLYNLTLQQATGAVCAINGNFAGGKSQEIVVARGKTDDLIRPDDSGKIQTLHSVDVFGX
IRSLAHFRLTGSHKDYIVVGFDSGRIVILEYQKGQECFDKIHQETFGKSGCRRXRPGQHL
SVDPKGRTVMIAACEKQKLVYVLNRDTAARLTXSSPLEAHESQTVTYSITGVDCGFENPI
FAAIELDYSEADQDSTGVCKLSTGQAAAVAQKHLAFYELDLVLNHFPRKWTEPIDNGANL
LVTVPGGGDGPSGILICAENFVIYKNQGHPDVRAVIPRRADHPAERGVLIVSAATHRQKS
MFFFLLQTEYGDIFKATLIHEGDCVTELKIKYFDTIPVTSAMCVLKSGYLFAXSEFGNHG
LYQFQAIGDGDDVEASSETLMETEEGFQPVFFQPRSLKNLVRIDHIANLMPTMDMRIMNF
FKXTPQIFSLCGRGPRSSLRXLRPGLSISEMAVERLPAVPNTVWTVKKNVTDEFDAYIVV
SFPNATLVLSIGETVEEVSDSGFLDTTPSRAVSLIGDDSLMQVHPNGIRHIREDGRINEW
KTPGKKTIATVGSNRPQVVIALSGGELIYFEMDMTGQLMEVEKHEMPXDVVCLDIAPVPE
GKQRSRFLAVCSYDNTIRILSLDPDDCMQVLSVQSVSSPPESLLLLEVQASTGGEDGADH
PASVFLNAGLQKGVLFRTVVDMVTGQLSDTRSRFLGLRAPKLFSATVAGRQAMLCLSSRP
WLGYIHQGHFLLTPLSYETLEFAASFSSDQCAEGVVAVAGDALRVFTIERLGETFNETVI
PLCYTPRKFVLQPKRKLLVIIESDQGAFTAEERESARKECLEAAGVGENGNANNGEQMEN
GADDEEKEDPLSDEQYGYPKAESDKWASCIRVLDPRSGNTTCLLELQDNESAFSACTVNF
HDKEHGTLLAVGTAKGLQFWPKMTFVAGFIHIYRFIEDGKSLELLHKTQVEGIPLALCQF
QGRLLAGIGPVLRLYDLGKRRLLRKCENKLFPNTIISIQTYRDRIYVGDVQESFHYCKYR
WDENQLYIFAHDYVPRWLTASYHIDFDTMAGADKFGNFYFVRRPQGVSDEIEEDPTGGKI
KWEQGKLNGAPNKVEEIVQFHVGDVVTALQKALLIPGGGECIIYGTVMCSLGALLAFTSR
EDVDFFSHLEMHVRQEHPPLCGRDHMAYRSAYFPVRDVIDGDLCEQFPTLPPDLQRKIAD
ELDRTPGEILKKLEDARNKII
NT seq
3666 nt
NT seq
+upstream
nt +downstream
nt
atgcatctttacaacctgaccctgcagcaggcgacgggcgctgtttgtgcgatcaatggc
aacttcgccggcggcaaatcccaagagatcgttgttgcccgtggaaagacagacgacctc
atccgccctgacgattccggcaagatccagaccctccactccgtcgacgtcttcggcnnc
atcagatccctcgcccacttccgcctcaccgggtcccacaaggactacatcgtcgtgggc
ttcgactcgggccgcatcgtcatccttgagtaccaaaaaggacaagaatgcttcgacaag
atccatcaggagaccttcggcaagtccggctgccgccgcncacgtcccggccagcatctg
tccgttgatcccaagggccgaaccgtcatgattgctgcctgcgagaagcagaagctcgtc
tatgtcctcaaccgcgacaccgccgcccgcctcaccnnatcctcccccctcgaagctcac
gagtcccagaccgtaacctattccatcaccggtgtcgactgcggctttgaaaaccccatc
ttcgctgccatcgagctcgactactccgaggccgaccaggactccacaggtgtatgtaaa
ttatctacaggtcaggctgccgccgttgctcagaagcacctcgcattctacgagctcgat
ctcgtcctcaaccattttccccgcaagtggaccgagcctatcgacaatggggcgaatctc
cttgtaactgtccctggaggaggagatggacccagcggcatcctcatctgtgccgagaac
tttgtcatctacaagaaccagggacatcccgatgtgcgtgctgtcatacctcggagagcc
gatcatcctgcagagcgtggagttctcatagtctctgctgccacccatcgtcagaagtcc
atgttctttttcctcttgcagaccgagtatggcgacatcttcaaggccactctcatccat
gagggcgactgcgtcactgagctcaagattaagtactttgataccatcccggtcacctct
gccatgtgcgtcctcaagagtgggtacctatttgctngctcggaattcggaaaccatggg
ctctaccagtttcaggcaattggggatggagacgatgttgaggcctcctctgagactttg
atggaaacggaggaaggcttccagccggtctttttccagccacgaagcttgaagaacctt
gtgaggattgaccacattgcgaacctcatgcctaccatggacatgagaatcatgaacttt
tttaagnngacacctcagatattcagtctgtgtggtcggggccctcgttcctcccttaga
ntattgagacctgggttgtctatcagcgagatggctgtggagaggctccctgctgtgccc
aacactgtgtggacagtgaagaaaaatgtgactgatgagtttgatgcgtatattgttgtc
tccttccccaatgctacccttgtcctgtcgatcggtgagacggttgaggaagtcagtgac
agcgggtttcttgacaccacgccttcacgtgcggtttctttgatcggggatgattctctg
atgcaggtccatccgaatggtattcgccacatcagagaagatggtcgtattaacgaatgg
aagacgcccgggaagaagaccattgccacggttggatccaacaggcctcaggttgtcatt
gctctcagtggaggggagcttatatactttgagatggacatgacaggtcagctgatggag
gtggagaagcatgagatgcctngggatgtggtctgcttggacattgcacctgttcctgaa
gggaagcagaggtctcgtttccttgcagtttgctcctatgacaacactatccgcattctg
tcgctggatcctgacgattgtatgcaggttttgagtgtgcagagcgtgtcctcacctccg
gaatcacttctcttgcttgaagtgcaggcttccactgggggagaggacggcgccgatcac
cctgccagtgtatttcttaatgctggtctgcaaaagggtgtcctgttcagaactgtagtg
gatatggtcactggacagctctccgatactcgttcgcgtttcttgggtttgagagccccg
aagcttttttcagcgacggtggcgggcagacaggctatgctttgtttgtcaagccgtcct
tggctggggtatatacatcaggggcattttctgttaactcctctttcctacgaaacactt
gagtttgctgcctctttctcctccgaccagtgtgctgagggtgtagtcgcagttgctgga
gatgctttgagggtattcactattgaacggctgggggaaacattcaatgagacggtaata
cctttgtgctatactccaaggaagtttgtcctccagcccaagaggaaactcttagtcatc
atagagagtgatcagggagcattcaccgcagaagagcgcgaatctgcgagaaaagagtgc
ttggaggctgcaggtgttggtgaaaatggaaatgcaaataatggtgaacagatggagaat
ggtgctgatgatgaggagaaggaagatcctctttctgatgagcagtatggttatccgaag
gcagaatcagataagtgggcgtcttgcatcagagttctcgatccaaggtcaggaaacact
acttgtttgctggagctgcaggacaatgagtctgcttttagcgcatgtactgtgaatttt
catgataaggagcatgggactctacttgctgtgggtacagcaaaggggttgcagttctgg
ccaaagatgacttttgttgctgggtttattcacatatacaggtttatagaagatggaaaa
tcccttgaattgctgcataagacacaggtagagggaattccactagccttgtgtcagttt
cagggaaggcttcttgctgggattggcccagttctcagattgtatgatctggggaaaagg
agactactaaggaaatgtgagaacaaactcttcccaaatacaattatctctattcagaca
taccgggacaggatttatgttggtgacgtccaagagtcatttcactactgcaagtacaga
tgggatgaaaaccaactttacatattcgcacacgattatgttcccaggtggctaacagca
tcatatcatatagattttgacacaatggctggggcagacaagtttgggaatttttatttt
gtacgacggccacagggtgtctcggatgagattgaagaagacccaactggtgggaagata
aagtgggaacaagggaagttgaatggcgctcccaacaaggtggaggagattgttcagttc
catgttggcgatgttgtcacggccttgcagaaggccttattgatacctgggggtggtgag
tgcatcatttatggcactgttatgtgcagcttaggggcattacttgcattcacctctaga
gaagatgttgatttcttctctcatttggagatgcacgtgaggcaggaacatccaccatta
tgtggcagggatcacatggcttacagatccgcatatttcccagttagggatgtgattgat
ggtgatctgtgtgagcaattccctacattacctcctgatttgcagaggaagattgctgat
gaattggatagaactccgggggagattctgaagaagttggaggatgctagaaataagatc
atctga
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integrated database retrieval system
