Asparagus officinalis (garden asparagus): 109842662
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Entry
109842662 CDS
T05243
Name
(RefSeq) clathrin heavy chain 1
KO
K04646
clathrin heavy chain
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof04142
Lysosome
aof04144
Endocytosis
aof05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
109842662
04142 Lysosome
109842662
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
109842662
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
aof04131
]
109842662
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
aof04147
]
109842662
Membrane trafficking [BR:
aof04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
109842662
Exosome [BR:
aof04147
]
Exosomal proteins
Proteins found in most exosomes
109842662
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
Clathrin_propel
Clathrin_H_link
Clathrin-link
TPR_COPA_B
Motif
Other DBs
NCBI-GeneID:
109842662
NCBI-ProteinID:
XP_020267099
LinkDB
All DBs
Position
5:12806787..12827849
Genome browser
AA seq
1706 aa
AA seq
DB search
MAAASAPIAMKEALTLPSIGINQQFITFTHVTMESDKYICVRETSPQNSVVIIDMSMPMQ
PLRRPITADSALMNPISRILALKAQIPGTTQDHLQIFNIEQKTKIKSHQMPEQVVFWKWV
TPKVLGLVTQSSVYHWSIEGDSEPVKMFDRTANLTNNQIINYRCDPSEKWLVLIGIAPGS
PERPQLVKGNMQLFSVDQQRSQALEAHAASFASIKVAGNDKDSILISFASKTTNAGQITS
KLHVIELGAQPGKPGFSKKQADLFFPPDFADDFPVAMQISHKYGLIYVITKLGLLFVYDL
ETATAVYRNRISPDPIFLTAEASSIGGFYAINRKGQVLLATVNEATLVPFVSGQLNNLEL
AVNLAKRGNLPGAENLVVQRFQELFSQTKYKEAAELAAESPQGILRTPETVAKFQSVPVQ
AGQTPPLLQYFGTLLTKGKLNAFESLELSRLVVNQNKKNLLENWLAEDKLECSEELGDLV
KTVDNDLALKIYIKARATPKVVAAFAERREFDKILIYSKQVGYTPDYLFLLQTILRSDPQ
GAVNFALMMSQMEGGCPLDYNTITDLFLQRNLIREATAFLLDVLKPNLPEHAFLQTKVLE
INLVTYPNVADAILANGMFSHYDRPRIGQLCEKAGLYIRALQHYSELPDIKRVIVNTHAI
EPQALVEFFGTLSKEWALECMKDLLLVNLRGNLQIIVQTAKEYSEQLGVDACIKLFEQFK
SYEGLYFFLGSYLSSSEDPDIHFKYIEAAAKTGQIKEVERVTRESNFYDAEKTKNFLMEA
KLPDARPLINVCDRFGFVPDLTHYLYTNNMLRYIEGYVQKVNPSNAPLVVGQLLDDECPE
DFIKGLIISVRSLLPVEPLVDECEKRNRLRLLTQFLEHLVSEGSQDVHVHNALGKIIIDS
NNNPEHFLTTNPYYDSRVVGKYCEKRDPTLAVVAYRRGQCDDELINVTNKNSLFKLQARY
VVERMDSDLWEKVLLPDNEYRRQLIDQVVSTALPESKSPEQVSAAVKAFMTADLPHELIE
LLEKIVLQNSAFSGNFNLQNLLILTAIKADASRVMDYINRLDNFDGPAVGEVAVEAQLYE
EAFAIFKKFNLNVQAVNVLLDNIQNIDRAVEFAYRVEEDAVWTQVAKAQLREGLVSDAIE
SFIRADDATYFLEVIQAAENANVYHDLVKYLLMVRQKSKEPKVDSELIYAYAKIDRLSEI
EEFILMPNVANLQNVGDRLYDEALYEAAKIIFAFISNWAKLAVTLVKLKQFQGAVDAARK
ANSSKTWKEVCFACVDAEEFRLAQICGLNIIVQVDDLEEVSDYYQNRGCFNELISLMESG
LGLERAHMGIFTELGVLYARYRPEKLMEHIKLFSTRLNIPKLIRACDEQQHWKELTYLYI
QYDEFDNAATTIMNHSPDAWDHMQFKDVAVKVANVELYYKAVHFYLQEHPDLINDMLNVL
ALRVDHTRVVDIMRKAGHLHLVKPYMIAVQSNNVSAVNEALNEIYVEEEDYDRLRESIDL
HDNFDQIGLAQKIEKHELLEMRRVAAYIYKKAGRWKQSIALSKKDKMYKDAMETCSQSGE
RELSEELLVYFIEQGKKECFASCLFICYDLIRPDVALELAWTNNMLDFTFPYLLQFIREY
TSKVDDLMKDKLEAMNEVKSKEKEEKDMVAQQNMYAQLLPLALPAPPMPGMGGMSGPFGG
APAPPPPMGGMGMPPMPAYGMPPMGY
NT seq
5121 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggccagcgctccgatcgctatgaaggaggccttgacgcttcctagtattggg
attaaccagcaatttatcacctttactcacgtaacaatggaatcggacaagtatatctgt
gtgagggagacatctccacagaacagtgtagttataatcgacatgagcatgccgatgcaa
ccgctgcggaggccgattactgccgattcagctcttatgaatcccatcagcaggattctt
gctctcaaagcccaaatacctgggactactcaggatcatctccaaatattcaatattgag
cagaagacaaaaattaaatcgcatcagatgccagaacaggttgttttctggaaatgggtc
actccaaaagtgctggggttggtcactcaatcatcagtttatcattggtcaatagaaggt
gactctgagcctgtaaagatgtttgatagaacagctaatttgacgaacaaccagatcatt
aactaccgctgtgacccttctgaaaaatggctagttctgatcggaatcgcacctggttct
cctgagagaccacaactggttaaaggaaatatgcagcttttctcagtggatcaacaacgt
agtcaggctttagaggctcatgctgcatcatttgcatcgattaaggttgctggaaatgat
aaagattctattcttatttcctttgcttcaaagactaccaatgctggacagattacttcg
aagttgcatgtgattgaacttggtgcacagccaggcaaaccgggcttttcaaaaaaacaa
gcagatctgttcttcccgcctgattttgctgatgactttcctgtagctatgcagatctct
cacaaatatgggttgatttatgtcatcacaaaacttggtcttctatttgtctatgatctg
gagactgctactgcagtctacagaaatcgtattagcccggatcctatatttctaactgca
gaagcttcgtctattggtggcttttatgctatcaacagaaaagggcaggttcttctcgca
accgttaatgaagcaactcttgtaccctttgtcagcggtcagctgaacaatttggagctt
gctgttaatcttgccaaacgaggaaaccttccaggggcggagaatttggtcgtccaaaga
tttcaagaactcttttcccagacaaagtataaggaggctgccgagcttgctgcagagtct
ccacaaggaatccttaggactcctgagactgttgccaaatttcagagtgttcctgtgcaa
gctgggcaaacaccaccactgttgcaatactttgggacattgttaacaaagggaaaactg
aatgcatttgaatctttggagttatctcgtcttgtagtaaatcagaacaagaagaatctt
ttggaaaattggttagctgaagacaagcttgagtgtagcgaagagctaggtgacttagta
aagactgttgacaatgaccttgctctgaaaatatacataaaagcgagagctactccgaaa
gttgttgcggcgtttgctgaaagaagggagtttgacaagatcctgatatattcaaagcag
gttggatacacgccagattatcttttcctcctccagaccattctgagatcagatcctcag
ggtgcagtgaattttgctcttatgatgtcccaaatggagggaggctgtccacttgactat
aataccatcacagacctcttccttcagagaaacttgatcagagaggcaacagcatttctg
ttggatgtcttgaaaccaaatcttccagaacatgctttccttcaaacaaaggtgctggag
atcaatcttgtgacgtacccaaatgttgcggatgctatattagccaatgggatgttcagt
cactatgatcgtcccaggataggtcagctatgtgagaaggctggcttgtatatccgtgct
cttcagcattattcagaattgcctgatattaagcgtgtcattgtgaatactcatgcgatt
gagccacaggctcttgtggagttttttgggactctttcaaaggagtgggctctagagtgc
atgaaagacctattgcttgtaaatctgagaggaaatcttcagataattgtgcagactgcc
aaagagtattctgagcagttgggtgttgatgcatgcatcaaactgttcgagcaatttaaa
tcctatgaaggcctttatttcttcctgggatcatatcttagctccagtgaggatccagat
atacacttcaagtatattgaagcagcagctaaaactgggcagatcaaggaagtcgaaagg
gtaacaagagaatcaaatttctatgatgcggagaagacgaagaatttccttatggaagcc
aaacttccagatgcacggcctcttataaatgtctgtgatcgttttggctttgtccctgat
ctgactcactacttgtacacaaacaacatgctccgatatattgaaggttatgttcagaag
gtgaatccaagcaatgctccattagtggttggccaactgctagatgatgagtgccctgaa
gatttcatcaaaggtctaattatttcagtccggtctctcctccctgtagagccactcgtg
gatgaatgtgagaagaggaatcgtcttcgattactcacgcaattcttggaacatctcgtg
agtgagggaagccaggatgtgcatgttcacaatgcgttgggaaaaataatcattgatagc
aataacaatccagagcattttctcaccactaacccatactatgattcacgtgttgtgggt
aagtattgtgagaagcgggatccaactcttgcagttgttgcttacagacgaggacaatgt
gatgatgaacttataaacgtcacaaacaagaactccctcttcaaattgcaggccagatat
gtggtggagaggatggattctgatctctgggagaaggtgcttcttcctgacaatgagtat
aggagacagcttattgatcaggttgtttctactgccctgcctgaaagcaagagccctgag
caagtatctgcagctgttaaagctttcatgactgctgatcttcctcatgaattgattgag
ttacttgagaagattgtgctccaaaattctgctttcagtggaaacttcaatctgcaaaat
ttgcttatcttaacagccatcaaagcagatgcatctagggttatggattacatcaataga
ttggacaactttgatggacctgcagttggagaggttgctgttgaagcacaattgtatgag
gaagcctttgctatttttaagaagttcaatttgaacgtccaggcagtgaatgttcttctg
gataacatccaaaacatagaccgggcggtggagtttgcctaccgtgttgaagaagatgca
gtttggactcaggtagcaaaggctcagctacgggaagggctagtgagcgatgcaattgaa
tcgtttattcgtgcagatgatgcaacctatttcttagaagttattcaggctgctgaaaac
gctaatgtataccatgacttggttaagtatttgctgatggtcaggcagaaatctaaagag
ccaaaggtcgacagtgaactcatatatgcgtatgcgaagattgataggttgagtgaaata
gaggaattcatccttatgccaaatgttgccaatctccaaaatgtcggtgatcgtctatat
gatgaagctctatatgaagctgcaaagatcatatttgccttcatttccaactgggccaaa
ctggctgttaccctggttaaactcaaacagttccaaggtgcagttgatgcagctcgcaaa
gcaaacagttcaaagacatggaaggaggtctgcttcgcttgtgtggatgctgaagagttc
cgcttggcacaaatctgtggcctcaatattattgtacaggtggatgacttggaggaagtt
agtgattattaccagaatagaggatgcttcaatgaattgatctctctcatggagagcggc
ctcggattggagcgggctcacatgggtatttttacagagctgggagtgttatatgctaga
tatcgtccagagaaacttatggagcacatcaaactgttctcaacacgactgaacattccc
aagcttatccgtgcttgtgatgagcaacaacattggaaagagctcacttacctgtatata
cagtatgatgaattcgacaatgccgctaccacaatcatgaaccactctccagatgcctgg
gatcacatgcagttcaaagatgttgctgtcaaagtggcaaatgttgaactttactacaaa
gcggtgcacttctatttgcaggagcatcctgatcttatcaatgatatgctcaatgttctt
gctctccgtgtggatcatacacgtgttgtggacatcatgcggaaggctggccacttgcat
cttgtgaaaccatatatgattgcagtacagagcaataatgtatctgctgtgaatgaagcc
ttaaatgaaatctatgttgaagaagaggactatgacaggctaagagagtccattgatttg
catgataattttgatcagataggccttgctcagaagattgaaaaacatgagcttctggaa
atgagacgggtcgctgcatatatttataagaaagcaggaagatggaaacagtccattgct
ctgtctaagaaggacaaaatgtacaaagatgctatggagacatgctctcagtctggtgaa
cgcgagctttctgaggagttgcttgtttatttcattgagcaggggaagaaagaatgcttt
gcttcatgtctctttatctgttatgacttgattcgacctgatgttgctctagagcttgca
tggacgaacaatatgcttgacttcactttcccataccttctacagtttattcgtgaatac
acaagcaaagtggacgacctcatgaaagataagctcgaagccatgaacgaggtgaaatcc
aaggagaaggaagagaaagacatggttgctcagcagaatatgtatgcccaattgctacct
cttgcattaccagcaccaccaatgcctggaatgggtggaatgagcggtccttttggcgga
gcgccggccccaccaccacctatgggtggtatggggatgcctcccatgcctgcctatggc
atgcctcctatgggatattga
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integrated database retrieval system
