Asparagus officinalis (garden asparagus): 109842914
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Entry
109842914 CDS
T05243
Name
(RefSeq) transcription factor bHLH140 isoform X1
KO
K10863
aprataxin [EC:
3.6.1.70
3.6.1.71
3.6.1.72
]
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
109842914
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aof03400
]
109842914
Enzymes [BR:
aof01000
]
3. Hydrolases
3.6 Acting on acid anhydrides
3.6.1 In phosphorus-containing anhydrides
3.6.1.70 guanosine-5'-diphospho-5'-[DNA] diphosphatase
109842914
3.6.1.71 adenosine-5'-diphospho-5'-[DNA] diphosphatase
109842914
3.6.1.72 DNA-3'-diphospho-5'-guanosine diphosphatase
109842914
DNA repair and recombination proteins [BR:
aof03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
109842914
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
109842914
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DcpS_C
AAA_33
zf-C2HE
HIT
Macro
AAA_18
CPT
Zeta_toxin
AAA_17
AAA_25
Viral_helicase1
AAA_16
AAA_29
nSTAND3
AAA_22
NTPase_1
RsgA_GTPase
AAA_28
AAA
Motif
Other DBs
NCBI-GeneID:
109842914
NCBI-ProteinID:
XP_020267419
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All DBs
Position
5:complement(12303066..12310833)
Genome browser
AA seq
716 aa
AA seq
DB search
MDLDANPQHQDSEEKPKGIVVILSGAPGSGKSTFCNDVLSAGRRSWVRVCQDTIANGKAG
TKSQCLKSAAAALKEGKSVFIDRCNLEKEQRAEFVKLGDEQVDVHAVVLDLPAKVCISRS
VKRSGHEGNLQGGKAAAVVNRMLQKKELPKVSEGFSRITFCQNENDVRDAVKIYSNLGQN
DNLPAGNFGQKSPDAKVQLGIMKFLKKVENPKNASNGSQGSSPKQEIKDKDPCFMELENE
HENKEGIKLKDSLVDDIPILAFPSISTSDFQFDHGKASDVIVESVIEFLNKVDNVRLVLV
DISHKSHMLSLVKEKAEKKNIDPNKFSTLVGDITRLCTEGKLCCRVIANAANWRLKPGGG
GVNAAIFKAAGEDLEMATKERADTLSPGTSVAIPLPSTSPLYRREGVTHVIHVLGPNMNP
QRPNCLKNDYVKGCKVLRDAYASLFENFASITRDQRCNEVKSSDPRNDASKRSSVDNLHN
DQKNKRDGFHDSESNKKSKPDDNMVVYKDKQKNEKTAAKRTWGSWAQALHQMAMDPEKHK
DAVIEIFDEFVALNDLYPKAKKHILVVSRLPGLDSIADVQKEHLPLLKTMHDAGLKWAEK
FLKEDASLTFRLGYHSVPSMRQLHLHVISQDFDSPHLKNKKHWNSFNTLFFRDSTDVIEE
VEKSGEVTLNDENLLSVELRCHRCRSAHPNIPRLKFHISNCKASISSTQRLVFASS
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
atggacctcgacgccaatccccagcaccaagattcagaggagaagcccaagggcatagtc
gtaattctcagcggagctccgggcagcggaaagtccacgttctgcaacgatgtcttgagc
gccggccgccgatcttgggttagggtttgtcaggacactattgcaaatgggaaggctggt
acaaaatcacagtgcttgaagagtgctgctgctgcattaaaggaaggcaaaagtgttttt
attgacagatgcaatttggagaaagaacaacgtgctgagtttgtgaagcttggtgatgaa
caagtagatgtgcacgcagtagtacttgatcttcctgctaaggtttgtatttctaggtca
gtgaagagatccgggcacgagggcaacctgcagggtgggaaagctgctgctgtggtcaat
agaatgctacaaaagaaagagttacctaaagtcagtgaaggattctcgaggattactttt
tgtcagaatgaaaatgatgttagagatgcggttaaaatatacagtaacttgggtcagaat
gataaccttccggctggaaattttggtcagaaaagccctgatgctaaagtgcagcttggg
ataatgaagtttcttaagaaagttgagaaccctaagaatgcatctaatggttcacaaggt
tcttccccaaaacaagaaattaaggacaaagacccctgtttcatggaacttgaaaatgag
catgagaataaggaaggtataaagctcaaagactcgttggtagatgatatacctattctg
gctttcccgtctatatcaacctcagatttccaatttgaccatggaaaggcgtctgatgtt
attgtggagagtgttattgagtttttgaacaaggttgataatgtcagacttgttctggta
gatataagccataagtcacatatgttatctttggttaaggagaaagctgagaagaaaaat
attgacccgaacaagttttccacacttgttggagacataactcggctttgtacagaagga
aaactatgctgcagagtcattgctaatgctgcaaactggcgattaaaacctggaggtgga
ggagttaatgcagctatattcaaagcagcaggtgaagatctggaaatggcaacgaaggaa
agggctgatactcttagccctgggacctctgttgccattcctcttccttctacttctcct
ctctatcgaagagaaggagttactcatgttatacatgttcttggaccaaatatgaaccca
cagagaccaaactgccttaaaaatgactatgtcaaaggttgcaaggtccttcgtgatgcc
tatgcctctctttttgaaaactttgcatccattacacgagaccaaagatgcaacgaggta
aagagcagtgatcctagaaatgatgccagtaagagaagcagtgtcgataatttgcacaat
gatcagaagaacaaacgagatggcttccatgactccgagagtaacaaaaaatcaaaacct
gatgataacatggtagtttataaagataagcagaagaatgagaaaactgctgcaaaaagg
acctggggttcatgggcacaagctcttcatcagatggccatggatcctgagaagcacaag
gatgctgtcattgagatattcgatgaatttgtagctttaaatgacctttatccaaaggca
aaaaaacacatcctcgtggtatcaagattgcctggtctcgattctatagcagatgttcag
aaggaacaccttccgttgttgaagacaatgcatgatgcaggtcttaagtgggcagagaag
ttcttaaaagaagatgcttctttaacttttagacttggatatcattcggtcccatcaatg
cgtcaactccaccttcatgttatcagccaagatttcgactcaccacaccttaagaacaag
aaacattggaattctttcaacacccttttctttcgtgattctacggacgttattgaggaa
gtcgaaaagtctggagaagtgactttgaacgatgagaacttgttgtctgtggaattgaga
tgccacaggtgcaggagtgcacatcctaacatccccaggctcaagtttcatatttctaat
tgcaaagcatctatttcgtctactcaacgactagtttttgcgtcctcataa
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