Asparagus officinalis (garden asparagus): 109842946
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Entry
109842946 CDS
T05243
Name
(RefSeq) ERAD-associated E3 ubiquitin-protein ligase HRD1B-like
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof04120
Ubiquitin mediated proteolysis
aof04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
109842946
04120 Ubiquitin mediated proteolysis
109842946
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
aof04121
]
109842946
Enzymes [BR:
aof01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
109842946
Ubiquitin system [BR:
aof04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
109842946
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-rbx1
zf-C3HC4
zf-C3HC4_2
zf-RING_UBOX
zf-C3HC4_3
zf-ANAPC11
FlxA
MIX23
zf-HC5HC2H
zf-RING_16
zf-RING_5
zf_RING_Vps8
zf-RING_Vps41
zf-RING_11
Motif
Other DBs
NCBI-GeneID:
109842946
NCBI-ProteinID:
XP_020267460
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All DBs
Position
5:11574405..11591165
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AA seq
478 aa
AA seq
DB search
MLRLQTYAGFSFLAVITVIYHAFNSRGQFYPAMVYLSTSKVCFVLLLNMVLVFMCILWQL
VKLLFLGTLREAEIERLNEQVWREIMEILFAITIFRQDFSVTTLGMITTLLMIKSLHWLA
QKRVDHIETAPSVSLLSHVRIASFLVFLLVVDCVLLHRPLKSFIQTKKASVALFFLFEYT
ILASTTMSTLLKYAFYVCDVIMEGQWEKKAVFTFYLELVRDLVNLSLYILFFLVIFAHYG
LPLHLIRELYETFRSFRIRIADYIRYRKVTSNVDERFPSATPEEINASDATCIICREEML
TAKKLHCGHLFHVHCLRSWLERQNICPTCRALVIPPENGSAASGQQARSTPASTSPQGSE
DVHLSPDQARLKAAALAASVYERSFVCSPPGTNIGSSGYSSVSYGNMPATPAPAIGNPDP
KISMLKAREAFIQTQIEILRSELQAVQKQKKDEDKASIGDADGAVSDIKGKAIVNASL
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
atgttgaggctgcaaacttatgctggatttagtttcttggcggtgattactgttatatat
catgcatttaacagcagaggacagttctatcctgccatggtttatttgtccacttcaaaa
gtctgttttgtgcttcttttgaacatggtcctcgtcttcatgtgcatactgtggcagcta
gttaagcttttgtttcttggtactcttagagaagcagaaatcgaaagattaaatgaacaa
gtatggagggagattatggaaattctttttgctattactatatttaggcaagatttctcc
gttactactcttgggatgattaccacacttttgatgattaaatccttgcattggctggcg
caaaagagggttgaccacattgagacggctccatcggtttctttactttcccatgtcagg
attgcttcctttttggtatttcttctcgttgtggattgtgttctattgcacaggcctctg
aagtcatttatacagacaaagaaggcatcagttgccctcttctttttatttgaatacacc
atattagcgtcaacaacgatgtcaacattattgaagtatgctttctacgtttgtgacgtg
atcatggaagggcagtgggagaagaaggctgtgtttacattttacttggaacttgtccgc
gaccttgttaacttgtcattgtatatccttttctttcttgtgatcttcgcgcactatggt
ttgccgctgcacttgatccgagaactctatgagacatttcgcagcttcagaatccgcatt
gcggattacattcgttaccggaaggttacatcaaatgtggatgagcggttcccgagtgca
acacctgaggagattaatgcaagtgatgcaacgtgcattatttgccgtgaagagatgtta
acagccaaaaagttgcattgtgggcacctttttcatgtgcattgtttgcgatcatggtta
gaacgacagaatatttgcccaacttgcagagctttagttattcctcctgaaaatggatca
gctgcatctggacaacaagccagatccacaccggcaagcacatctccgcaaggctcagaa
gatgttcacttaagcccagaccaggcgaggcttaaagctgctgcattggctgcttccgtt
tatgaaaggtcttttgtctgttctccgccaggcactaacattgggtcttctggatattcc
tcagtaagttatggaaatatgccagctactccagctcctgctataggcaatccagaccct
aaaatttccatgttgaaagcacgcgaggcttttatccagacccagattgagatcctgcga
agcgagttgcaagctgtgcagaaacaaaagaaagacgaggacaaggcaagcattggagat
gcagatggtgctgtctctgatatcaagggaaaagccattgtcaatgcttccttatag
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